Detail information of GWHGAAZE007415


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271958.20PREDICTED: zinc finger protein NUTCRACKER [Vitis vinifera]
Swissprottr|Q9LVQ7|IDD1_ARATH0Protein indeterminate-domain 1 {ECO:0000303|PubMed:16784536}
trEMBLtr|F6GWY3|F6GWY3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44469.1}
TAIR10AT5G66730.19E-87C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4488431944887165-
GWHAAZE00000002mRNA4488431944887165-
GWHAAZE00000002exon4488712644887165-
GWHAAZE00000002exon4488671744887034-
GWHAAZE00000002exon4488584644886242-
GWHAAZE00000002exon4488555044885758-
GWHAAZE00000002exon4488431944885118-
GWHAAZE00000002five_prime_UTR4488712644887165-
GWHAAZE00000002five_prime_UTR4488685644887034-
GWHAAZE00000002CDS4488671744886855-
GWHAAZE00000002CDS4488584644886242-
GWHAAZE00000002CDS4488555044885758-
GWHAAZE00000002CDS4488431944885118-
Transcript Sequence

Network for GWHGAAZE007415

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00096.27zf-C2H266880.0052
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.280
SRR3591706second leaf28.748
SRR3591707mature leaf41.604
SRR3591708Shoot apex33.250
SRR3591709Stem62.145
SRR3591710White floral bud44.484
SRR3591711White flower62.545
SRR3591712Green floral bud48.682
SRR3591713Yellow flower47.561
SRP173429 SRR8316895Juvenile bud stage 16.207
SRR8316896Juvenile bud stage 20.523
SRR8316897Juvenile bud stage 9.589
SRR8316894Third green stage 8.855
SRR8316900Third green stage 20.063
SRR8316901Third green stage 24.876
SRR8316898Complete white stage 10.540
SRR8316899Complete white stage 47.046
SRR8316903Complete white stage 20.352
SRR8316902Silver flowering stage18.112
SRR8316904Silver flowering stage21.473
SRR8316905Silver flowering stage12.022
SRR8316906Gold flowering stage 41.185
SRR8316907Gold flowering stage 39.638
SRR8316908Gold flowering stage 40.596
SRP132670SRR6706286Control39.770
SRR6706287Light intensity 50%37.539
SRR6706288Light intensity 20%38.131
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.679
CNS0095593Slightly white alabastrum(diploid) 219.280
CNS0095594Slightly white alabastrum(diploid) 322.395
CNS0095595Whole white alabastrum(diploid) 215.890
CNS0095596Whole white alabastrum(diploid) 312.700
CNS0095597Whole white alabastrum(diploid) 419.475
CNS0095598Silvery flower (diploied) 141.557
CNS0095599Silvery flower (diploied) 226.486
CNS0095600Silvery flower (diploied) 342.739
CNS0095601Golden flower (diploid) 132.064
CNS0095602Golden flower (diploid) 248.036
CNS0095603Golden flower (diploid) 344.229
CNS0095604Slightly white alabastrum(tetraploid) 116.914
CNS0095605Slightly white alabastrum(tetraploid) 215.590
CNS0095606Slightly white alabastrum(tetraploid) 338.157
CNS0095607Whole white alabastrum(tetraploid) 115.494
CNS0095608Whole white alabastrum(tetraploid) 213.466
CNS0095609Whole white alabastrum(tetraploid) 325.154
CNS0095610Silvery flower (tetraploid) 142.694
CNS0095611Silvery flower (tetraploid) 240.775
CNS0095612Silvery flower (tetraploid) 344.202
CNS0095613Golden flower (tetraploid) 124.908
CNS0095614Golden flower (tetraploid) 239.068
CNS0095615Golden flower (tetraploid) 330.548
CRA001975CRR073297Stem 163.740
CRR073298Stem 262.336
CRR073299Stem 371.006
CRR073300Leaf 163.330
CRR073301Leaf 263.736
CRR073302Leaf 361.111
CRR073303Juvenile bud 152.914
CRR073304Juvenile bud 245.171
CRR073305Juvenile bud 382.577
CRR073306Third green 151.183
CRR073307Third green 238.899
CRR073308Third green 343.315
CRR073309Second white 159.556
CRR073310Second white 238.807
CRR073311Second white 344.584
CRR073312Silver flowering 142.026
CRR073313Silver flowering 248.299
CRR073314Silver flowering 341.075
CRR073315Gold flowering 160.228
CRR073316Gold flowering 279.801
CRR073317Gold flowering 382.863
CRR073318Tawny withering 1100.664
CRR073319Tawny withering 283.899
CRR073320Tawny withering 367.688