Detail information of GWHGAAZE007390


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011099556.11.3977E-100PREDICTED: LOB domain-containing protein 41 [Sesamum indicum]
Swissprottr|Q9M886|LBD41_ARATH3E-85LOB domain-containing protein 41
trEMBLtr|M5WTB8|M5WTB8_PRUPE1E-93Uncharacterized protein {ECO:0000313|EMBL:EMJ16944.1}
TAIR10AT3G02550.17E-62LOB domain-containing protein 41

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4428952244290945+
GWHAAZE00000002mRNA4428952244290945+
GWHAAZE00000002exon4428952244289711+
GWHAAZE00000002exon4429033244290945+
GWHAAZE00000002CDS4428952244289711+
GWHAAZE00000002CDS4429033244290945+
Transcript Sequence

Network for GWHGAAZE007390

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB41017.70E-23
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.340
SRR3591706second leaf0.464
SRR3591707mature leaf0.154
SRR3591708Shoot apex0.278
SRR3591709Stem0.000
SRR3591710White floral bud0.099
SRR3591711White flower0.007
SRR3591712Green floral bud0.382
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.533
SRR8316896Juvenile bud stage 0.898
SRR8316897Juvenile bud stage 0.978
SRR8316894Third green stage 0.286
SRR8316900Third green stage 0.735
SRR8316901Third green stage 0.204
SRR8316898Complete white stage 0.232
SRR8316899Complete white stage 0.686
SRR8316903Complete white stage 0.318
SRR8316902Silver flowering stage0.005
SRR8316904Silver flowering stage0.292
SRR8316905Silver flowering stage0.186
SRR8316906Gold flowering stage 0.456
SRR8316907Gold flowering stage 0.437
SRR8316908Gold flowering stage 0.717
SRP132670SRR6706286Control1.036
SRR6706287Light intensity 50%1.130
SRR6706288Light intensity 20%1.631
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.544
CNS0095593Slightly white alabastrum(diploid) 20.493
CNS0095594Slightly white alabastrum(diploid) 30.079
CNS0095595Whole white alabastrum(diploid) 20.201
CNS0095596Whole white alabastrum(diploid) 30.529
CNS0095597Whole white alabastrum(diploid) 40.317
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.273
CNS0095600Silvery flower (diploied) 30.128
CNS0095601Golden flower (diploid) 10.334
CNS0095602Golden flower (diploid) 20.757
CNS0095603Golden flower (diploid) 30.871
CNS0095604Slightly white alabastrum(tetraploid) 10.327
CNS0095605Slightly white alabastrum(tetraploid) 20.787
CNS0095606Slightly white alabastrum(tetraploid) 31.064
CNS0095607Whole white alabastrum(tetraploid) 10.591
CNS0095608Whole white alabastrum(tetraploid) 20.253
CNS0095609Whole white alabastrum(tetraploid) 30.708
CNS0095610Silvery flower (tetraploid) 10.476
CNS0095611Silvery flower (tetraploid) 20.357
CNS0095612Silvery flower (tetraploid) 30.327
CNS0095613Golden flower (tetraploid) 10.852
CNS0095614Golden flower (tetraploid) 21.308
CNS0095615Golden flower (tetraploid) 30.138
CRA001975CRR073297Stem 11.967
CRR073298Stem 21.600
CRR073299Stem 31.246
CRR073300Leaf 12.222
CRR073301Leaf 21.498
CRR073302Leaf 32.510
CRR073303Juvenile bud 12.004
CRR073304Juvenile bud 20.534
CRR073305Juvenile bud 33.884
CRR073306Third green 10.000
CRR073307Third green 20.216
CRR073308Third green 30.493
CRR073309Second white 10.000
CRR073310Second white 20.069
CRR073311Second white 30.000
CRR073312Silver flowering 10.170
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.549
CRR073315Gold flowering 10.113
CRR073316Gold flowering 20.153
CRR073317Gold flowering 30.997
CRR073318Tawny withering 118.640
CRR073319Tawny withering 26.855
CRR073320Tawny withering 331.818