Gene detail

Detail information of GWHGAAZE007385

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283926.1	0	PREDICTED: mannose-6-phosphate isomerase 1 [Vitis vinifera]
Swissprot	tr\|Q9M884\|MPI1_ARATH	1E-167	Mannose-6-phosphate isomerase 1
trEMBL	tr\|F6HSR9\|F6HSR9_VITVI	0	Mannose-6-phosphate isomerase {ECO:0000256\|RuleBase:RU000611}
TAIR10	AT3G02570.1	7E-136	Mannose-6-phosphate isomerase, type I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	44189681	44193092	+
GWHAAZE00000002	mRNA	44189681	44193092	+
GWHAAZE00000002	exon	44189681	44190019	+
GWHAAZE00000002	exon	44190645	44190812	+
GWHAAZE00000002	exon	44191545	44191757	+
GWHAAZE00000002	exon	44192184	44192450	+
GWHAAZE00000002	exon	44192901	44193092	+
GWHAAZE00000002	CDS	44189681	44190019	+
GWHAAZE00000002	CDS	44190645	44190812	+
GWHAAZE00000002	CDS	44191545	44191757	+
GWHAAZE00000002	CDS	44192184	44192450	+
GWHAAZE00000002	CDS	44192901	44193092	+

Transcript Sequence
>GWHTAAZE007393 ATGGAGGTTGGTAAGCAGGGAAGGATTTACAGGCTGAGATGTTCAGTGCAGAACTATGATTGGGGACGAATTGGAAGCAAATCGACGGTGGCGAAGCTGTTTAAGCTCAATTCTAAGGTTGAGATTGAGGAAGAGAAGCCTTATGCTGAGATGTGGATGGGAGCTCACCAGTCCCTTCCTTCGTTCTTAGTCAAAAGTGCTGAGAATGGAGATGAATCGAATGGTGAAGAAGAAAAGAGTGAGAAGGTGAGTTTGAAGGATTGGATTGCTCAAAATCCTGAGGTGCTTGGTGATAAGGTTGTTGAGAAGTGGGGGAATAATTTTCCTTTCTTGTTCAAGGTACTTTCAGTTGCAAAAGCGTTGTCGATACAGGCACATCCGGATAAGGAACTAGCTGCCGTTCTGCATAAGTTGGAGCCAAATGTCTACAAGGATGATAATCACAAGCCTGAGATGGTTTTGGCATTAACAGATTTTGAAGCATTGTGTGGTTTTATCAGTAATGAGGAGCTAGTTGGTGTTCTTCAAAATGTTCCCGAGATTGTAGAAGTTGTTGGCAGTGCACAAGTGAATCAATTCGTACAAGTTAATGAGGAAGATGGGGAGGGGAAAGTAAAAGCAATTTTGCAAGCACTATTCACCCAACTTATGTCAGCTAGTAAGGTCGTAATTTCCGAAGTGTTATCCAAACTGATTAGCCGTCTGAACATGGAAAGCAAGGTAAGACAGTTGACTGGTAAGGAAGAACTAGTGTTGAGGCTTGAAAAGCAGTATCCAGATGATGTTGGAATCATAGCAGCCTTCCTCTTTAACTATGTGAAACTTAATGCTGGTGAAGCTTTGTATCTAGGGGCCAATGAACTTCATGCTTACTTATACGGCGAGTGTATTGAATGCATGGCAACATCAGACAATGTTGTGCGCGCTGGCCTTACTCCAAAAAACCGGGATGTCAAAACTCTTTGCTCCATGCTCACTTACAAACAGGGCTGTCCCGAAATTGTGCGAGGAGTCAATTTGAATCCATATACGAGAAGATACATCCCGCCTTTCGAGGAATTTGAGGTTGATCGTTGTATTCTCCCCCAAAGGGCATCAGTTGTTTTCCCTGCAGTCCCTGGTCCATCCATTTTTGCGGTAATGGTGGGAAAGGGAACAATGAATACGTCCGTCCGATGA

Network for GWHGAAZE007385

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01238.22	PMI_typeI	9	389	1.60E-108

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01809	manA, MPI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0009298	biological_process	GDP-mannose biosynthetic process
GO:0004476	molecular_function	mannose-6-phosphate isomerase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.816
	SRR3591706	second leaf	12.827
	SRR3591707	mature leaf	7.104
	SRR3591708	Shoot apex	8.761
	SRR3591709	Stem	21.013
	SRR3591710	White floral bud	1.228
	SRR3591711	White flower	5.340
	SRR3591712	Green floral bud	2.443
	SRR3591713	Yellow flower	10.833
SRP173429	SRR8316895	Juvenile bud stage	5.418
	SRR8316896	Juvenile bud stage	11.485
	SRR8316897	Juvenile bud stage	8.968
	SRR8316894	Third green stage	1.806
	SRR8316900	Third green stage	4.471
	SRR8316901	Third green stage	8.802
	SRR8316898	Complete white stage	1.834
	SRR8316899	Complete white stage	6.915
	SRR8316903	Complete white stage	3.999
	SRR8316902	Silver flowering stage	2.119
	SRR8316904	Silver flowering stage	3.973
	SRR8316905	Silver flowering stage	2.413
	SRR8316906	Gold flowering stage	1.780
	SRR8316907	Gold flowering stage	1.097
	SRR8316908	Gold flowering stage	0.967
SRP132670	SRR6706286	Control	4.880
	SRR6706287	Light intensity 50%	3.282
	SRR6706288	Light intensity 20%	4.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.025
	CNS0095593	Slightly white alabastrum(diploid) 2	5.241
	CNS0095594	Slightly white alabastrum(diploid) 3	12.678
	CNS0095595	Whole white alabastrum(diploid) 2	3.352
	CNS0095596	Whole white alabastrum(diploid) 3	6.023
	CNS0095597	Whole white alabastrum(diploid) 4	4.747
	CNS0095598	Silvery flower (diploied) 1	4.353
	CNS0095599	Silvery flower (diploied) 2	1.943
	CNS0095600	Silvery flower (diploied) 3	3.052
	CNS0095601	Golden flower (diploid) 1	2.319
	CNS0095602	Golden flower (diploid) 2	4.732
	CNS0095603	Golden flower (diploid) 3	2.937
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.598
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.366
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.744
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.857
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.142
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.815
	CNS0095610	Silvery flower (tetraploid) 1	2.678
	CNS0095611	Silvery flower (tetraploid) 2	1.247
	CNS0095612	Silvery flower (tetraploid) 3	0.590
	CNS0095613	Golden flower (tetraploid) 1	4.176
	CNS0095614	Golden flower (tetraploid) 2	0.912
	CNS0095615	Golden flower (tetraploid) 3	0.811
CRA001975	CRR073297	Stem 1	5.298
	CRR073298	Stem 2	4.964
	CRR073299	Stem 3	4.669
	CRR073300	Leaf 1	3.954
	CRR073301	Leaf 2	4.827
	CRR073302	Leaf 3	1.902
	CRR073303	Juvenile bud 1	2.232
	CRR073304	Juvenile bud 2	0.671
	CRR073305	Juvenile bud 3	2.555
	CRR073306	Third green 1	0.773
	CRR073307	Third green 2	1.853
	CRR073308	Third green 3	0.835
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.075
	CRR073311	Second white 3	0.283
	CRR073312	Silver flowering 1	0.074
	CRR073313	Silver flowering 2	0.121
	CRR073314	Silver flowering 3	0.086
	CRR073315	Gold flowering 1	1.017
	CRR073316	Gold flowering 2	1.427
	CRR073317	Gold flowering 3	2.322
	CRR073318	Tawny withering 1	0.290
	CRR073319	Tawny withering 2	1.597
	CRR073320	Tawny withering 3	0.896