Detail information of GWHGAAZE007361


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGA15798.10pyruvate decarboxylase 3, partial [Diospyros kaki]
Swissprottr|Q9LF46|HACL_ARATH02-hydroxyacyl-CoA lyase
trEMBLtr|L0CIW4|L0CIW4_DIOKA0Pyruvate decarboxylase 3 {ECO:0000313|EMBL:AGA15798.1} (Fragment)
TAIR10AT5G17380.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4384012243843348+
GWHAAZE00000002mRNA4384012243843348+
GWHAAZE00000002exon4384012243840278+
GWHAAZE00000002exon4384102543842283+
GWHAAZE00000002exon4384303443843348+
GWHAAZE00000002CDS4384012243840278+
GWHAAZE00000002CDS4384102543842283+
GWHAAZE00000002CDS4384303443843348+
Transcript Sequence

Network for GWHGAAZE007361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02776.19TPP_enzyme_N211847.00E-41
PF00205.23TPP_enzyme_M2103382.90E-33
PF02775.22TPP_enzyme_C4085591.40E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12261HACL1 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0000287molecular_functionmagnesium ion binding
GO:0030976molecular_functionthiamine pyrophosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.587
SRR3591706second leaf31.368
SRR3591707mature leaf44.694
SRR3591708Shoot apex29.134
SRR3591709Stem52.444
SRR3591710White floral bud95.894
SRR3591711White flower262.945
SRR3591712Green floral bud65.214
SRR3591713Yellow flower310.173
SRP173429 SRR8316895Juvenile bud stage 32.312
SRR8316896Juvenile bud stage 43.773
SRR8316897Juvenile bud stage 17.493
SRR8316894Third green stage 19.805
SRR8316900Third green stage 60.947
SRR8316901Third green stage 65.865
SRR8316898Complete white stage 39.258
SRR8316899Complete white stage 76.917
SRR8316903Complete white stage 66.903
SRR8316902Silver flowering stage95.402
SRR8316904Silver flowering stage97.789
SRR8316905Silver flowering stage50.739
SRR8316906Gold flowering stage 132.333
SRR8316907Gold flowering stage 151.361
SRR8316908Gold flowering stage 158.353
SRP132670SRR6706286Control67.266
SRR6706287Light intensity 50%64.769
SRR6706288Light intensity 20%68.218
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.859
CNS0095593Slightly white alabastrum(diploid) 239.202
CNS0095594Slightly white alabastrum(diploid) 341.016
CNS0095595Whole white alabastrum(diploid) 231.532
CNS0095596Whole white alabastrum(diploid) 334.842
CNS0095597Whole white alabastrum(diploid) 433.735
CNS0095598Silvery flower (diploied) 159.577
CNS0095599Silvery flower (diploied) 249.539
CNS0095600Silvery flower (diploied) 3114.573
CNS0095601Golden flower (diploid) 147.554
CNS0095602Golden flower (diploid) 2106.020
CNS0095603Golden flower (diploid) 3105.910
CNS0095604Slightly white alabastrum(tetraploid) 146.405
CNS0095605Slightly white alabastrum(tetraploid) 238.595
CNS0095606Slightly white alabastrum(tetraploid) 369.016
CNS0095607Whole white alabastrum(tetraploid) 137.810
CNS0095608Whole white alabastrum(tetraploid) 234.784
CNS0095609Whole white alabastrum(tetraploid) 368.217
CNS0095610Silvery flower (tetraploid) 1240.074
CNS0095611Silvery flower (tetraploid) 2190.950
CNS0095612Silvery flower (tetraploid) 3146.098
CNS0095613Golden flower (tetraploid) 1146.131
CNS0095614Golden flower (tetraploid) 2239.529
CNS0095615Golden flower (tetraploid) 3114.180
CRA001975CRR073297Stem 149.838
CRR073298Stem 247.156
CRR073299Stem 347.400
CRR073300Leaf 156.978
CRR073301Leaf 257.068
CRR073302Leaf 349.741
CRR073303Juvenile bud 166.074
CRR073304Juvenile bud 260.048
CRR073305Juvenile bud 379.946
CRR073306Third green 177.793
CRR073307Third green 258.676
CRR073308Third green 374.791
CRR073309Second white 152.442
CRR073310Second white 262.912
CRR073311Second white 344.279
CRR073312Silver flowering 155.479
CRR073313Silver flowering 253.533
CRR073314Silver flowering 360.831
CRR073315Gold flowering 132.698
CRR073316Gold flowering 246.816
CRR073317Gold flowering 335.727
CRR073318Tawny withering 143.230
CRR073319Tawny withering 240.307
CRR073320Tawny withering 342.715