Gene detail

Detail information of GWHGAAZE007346

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271649.1	6.5406E-124	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q9SXJ6\|CLPP3_ARATH	3E-118	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic (Precursor)
trEMBL	tr\|F6HSM4\|F6HSM4_VITVI	2E-124	ATP-dependent Clp protease proteolytic subunit {ECO:0000256\|RuleBase:RU003567}
TAIR10	AT1G66670.1	2E-90	CLP protease proteolytic subunit 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	43625100	43631871	+
GWHAAZE00000002	mRNA	43625100	43631871	+
GWHAAZE00000002	exon	43625100	43625138	+
GWHAAZE00000002	exon	43626318	43626432	+
GWHAAZE00000002	exon	43627864	43628039	+
GWHAAZE00000002	exon	43630898	43630993	+
GWHAAZE00000002	exon	43631274	43631545	+
GWHAAZE00000002	exon	43631838	43631871	+
GWHAAZE00000002	CDS	43625100	43625138	+
GWHAAZE00000002	CDS	43626318	43626432	+
GWHAAZE00000002	CDS	43627864	43628039	+
GWHAAZE00000002	CDS	43630898	43630993	+
GWHAAZE00000002	CDS	43631274	43631545	+
GWHAAZE00000002	CDS	43631838	43631871	+

Transcript Sequence
>GWHTAAZE007354 ATGCTTCAAAGGCAGAGAATCATTTTCTTGGGTTCCCAGGTAGATGATGCTTCAGCAGATTATGTAATAAGCCAGCTCTTATTTCTTGATGCTGAAGACGGGGAAAAAGACATCAAACTGTTTATCAATTCGCCTGGTGGTTCTATTACGGCTGGAATGGGGATATATGATGCAATGAAATTGTGCAAGGCAGATGTATCTACTATTTGCATGGGTTTTGCTGCATCAATGGGTGCATTCATCCTTGCTGCTGGTACTAAAGGGAAGAGGTATTGCATGCCTAATGCTAGGGTTATGATTCATCAGCCATATGGACAACTTGGGGGAAGTTTGACAGAAATGTACATAAGAACAAGAGAACTGATGTATCACATGGTTAAGATGAAGAAAATATTCTCAAGAATCACGGGGAAGCCTGAACACCAGATTGAAATGGATACAGACCGCGATAACTTTATGAATGCTTGGGAGGCAAAGGAATATGGGTTAGTGGATGTGGTTATTGATGATGGGAAGCCGGGATTAGTTGCACCCATTGCAGATGCGTCACCTCCGCCCAGACCCCGTTTGTCGAAGTTGTTGAGAATCGACGGCAGGAAGTCTGGCCACACCAATATTCCCTCAGAAGAAAAACTTTTGCAACAAGGAAGTGACGAGGGCAGAGGCACGGAAACAGATAGTGGAGCACCCCATCCGGGGGAGAAAAAGTTTGCACCTTTGGTTGCATATTGA

Network for GWHGAAZE007346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00574.24	CLP_protease	2	169	1.50E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01358	clpP, CLPP	Cell cycle - Caulobacter	map04112
K01358	clpP, CLPP	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.311
	SRR3591706	second leaf	104.702
	SRR3591707	mature leaf	107.270
	SRR3591708	Shoot apex	107.597
	SRR3591709	Stem	50.135
	SRR3591710	White floral bud	63.261
	SRR3591711	White flower	101.932
	SRR3591712	Green floral bud	75.117
	SRR3591713	Yellow flower	115.605
SRP173429	SRR8316895	Juvenile bud stage	59.702
	SRR8316896	Juvenile bud stage	75.150
	SRR8316897	Juvenile bud stage	41.643
	SRR8316894	Third green stage	33.096
	SRR8316900	Third green stage	116.130
	SRR8316901	Third green stage	107.412
	SRR8316898	Complete white stage	46.091
	SRR8316899	Complete white stage	111.831
	SRR8316903	Complete white stage	50.674
	SRR8316902	Silver flowering stage	49.739
	SRR8316904	Silver flowering stage	50.759
	SRR8316905	Silver flowering stage	26.987
	SRR8316906	Gold flowering stage	127.988
	SRR8316907	Gold flowering stage	114.376
	SRR8316908	Gold flowering stage	134.245
SRP132670	SRR6706286	Control	75.478
	SRR6706287	Light intensity 50%	71.748
	SRR6706288	Light intensity 20%	74.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	80.414
	CNS0095593	Slightly white alabastrum(diploid) 2	73.425
	CNS0095594	Slightly white alabastrum(diploid) 3	79.751
	CNS0095595	Whole white alabastrum(diploid) 2	80.258
	CNS0095596	Whole white alabastrum(diploid) 3	86.494
	CNS0095597	Whole white alabastrum(diploid) 4	77.461
	CNS0095598	Silvery flower (diploied) 1	67.841
	CNS0095599	Silvery flower (diploied) 2	68.425
	CNS0095600	Silvery flower (diploied) 3	84.864
	CNS0095601	Golden flower (diploid) 1	73.914
	CNS0095602	Golden flower (diploid) 2	77.953
	CNS0095603	Golden flower (diploid) 3	74.954
	CNS0095604	Slightly white alabastrum(tetraploid) 1	83.353
	CNS0095605	Slightly white alabastrum(tetraploid) 2	89.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.002
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.909
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.602
	CNS0095610	Silvery flower (tetraploid) 1	83.435
	CNS0095611	Silvery flower (tetraploid) 2	103.966
	CNS0095612	Silvery flower (tetraploid) 3	85.837
	CNS0095613	Golden flower (tetraploid) 1	80.090
	CNS0095614	Golden flower (tetraploid) 2	87.640
	CNS0095615	Golden flower (tetraploid) 3	72.714
CRA001975	CRR073297	Stem 1	69.408
	CRR073298	Stem 2	68.691
	CRR073299	Stem 3	60.699
	CRR073300	Leaf 1	69.787
	CRR073301	Leaf 2	63.757
	CRR073302	Leaf 3	65.052
	CRR073303	Juvenile bud 1	71.030
	CRR073304	Juvenile bud 2	67.462
	CRR073305	Juvenile bud 3	57.062
	CRR073306	Third green 1	30.100
	CRR073307	Third green 2	22.863
	CRR073308	Third green 3	28.926
	CRR073309	Second white 1	58.294
	CRR073310	Second white 2	59.239
	CRR073311	Second white 3	48.847
	CRR073312	Silver flowering 1	47.016
	CRR073313	Silver flowering 2	46.003
	CRR073314	Silver flowering 3	43.833
	CRR073315	Gold flowering 1	136.251
	CRR073316	Gold flowering 2	162.373
	CRR073317	Gold flowering 3	119.176
	CRR073318	Tawny withering 1	46.402
	CRR073319	Tawny withering 2	37.284
	CRR073320	Tawny withering 3	41.447