Gene detail

Detail information of GWHGAAZE007345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009608107.1	1.7613E-170	PREDICTED: methionyl-tRNA formyltransferase, mitochondrial [Nicotiana tomentosiformis]
Swissprot	tr\|F4JP46\|PURU2_ARATH	0.00000004	Formyltetrahydrofolate deformylase 2, mitochondrial (Precursor)
trEMBL	tr\|A0A022RMM2\|A0A022RMM2_ERYGU	1E-170	Uncharacterized protein {ECO:0000313\|EMBL:EYU41324.1}
TAIR10	AT1G66520.1	2E-126	formyltransferase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	43601701	43607103	-
GWHAAZE00000002	mRNA	43601701	43607103	-
GWHAAZE00000002	exon	43606981	43607103	-
GWHAAZE00000002	exon	43606287	43606421	-
GWHAAZE00000002	exon	43605131	43605233	-
GWHAAZE00000002	exon	43604932	43605002	-
GWHAAZE00000002	exon	43604724	43604828	-
GWHAAZE00000002	exon	43604503	43604536	-
GWHAAZE00000002	exon	43603663	43603763	-
GWHAAZE00000002	exon	43602384	43602593	-
GWHAAZE00000002	exon	43601701	43601790	-
GWHAAZE00000002	CDS	43606981	43607103	-
GWHAAZE00000002	CDS	43606287	43606421	-
GWHAAZE00000002	CDS	43605131	43605233	-
GWHAAZE00000002	CDS	43604932	43605002	-
GWHAAZE00000002	CDS	43604724	43604828	-
GWHAAZE00000002	CDS	43604503	43604536	-
GWHAAZE00000002	CDS	43603663	43603763	-
GWHAAZE00000002	CDS	43602384	43602593	-
GWHAAZE00000002	CDS	43601701	43601790	-

Transcript Sequence
>GWHTAAZE007353 ATGCATTCGTCTTCGCTAATGTTTCGACGATTCTGTTGTTTTAGTGCGGCTTCAACCTCTTCTATTACTCTTTCTTCTACAACTAATAAGAAGAAACAGCTCGTCTTTTTAGGTTCCCCTCAGGTTGCAGCCATTGTTACGCAGCCGCCTTCTAGAAGGGATAGGGGAAGAAAGGTGATGCCTTCTCCTGTTGCACAACACGCGCTTGATAGAGGCTTTCCTTCTGATTTGATTTTCACTCCCTTACGAGTTGGTGAGGAAACATTTTTGTCCAACTTTCGAGCTCTGGAGCCAGAACTTTGCATTACAGCAGCCTATGGGAATATTTTACCTAGGAAGTTTCTAAAAATTCCATCACTAGGGACAGTGAATATACACCCGAGCCTGCTGCCTTTGTACCGTGGGGCAGCTCCTGTTCAAAGAGCATTGCAGGATGGGGTGAAAGAAACAGGAGTATCATTAGCATTCACCGTCCGTGCACTGGATGCTGGACCTGTTATTGCCCATCAAAGAATGGAAGTTGATGATCATATTAAGGCACCGGACTTACTGGAGTTGCTTTTTCATCAAGGATCTGAACTTCTGATCCGTGAGCTTCCCTCCATATTTGATGGGTCAGCAAGGGTGAAAGCTCAACCGCAGGATGACTCCAAAGCCACTTTGGCTCCTAAGGTTCGCGCATTTGCAGGGTGGCCAGGAACACGGGCTAGAGTTGTAGTTCTCGACCCTAAGAGTGGCCAGCAAAATACTCTTGAGATTAAAATCATCACAACAAGAGTTTACAGCGGAAAAAATATCGAGGGTGGTGAAGTTAATGAAGATGAAGCATTCTTCACTAAAGGTTCGATAGTATTCCCATGTGGTGGGGGCACCGCCCTTGAGGTACTAGAAGTTCAGCTTCCAGGTAAAAAAGTGGTAAATGCAGCTGCATTTTGGAACGGTTTACGAGGTCAAAAGCTGAAGAAGTTATAA

Network for GWHGAAZE007345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00551.20	Formyl_trans_N	40	197	3.80E-31
PF02911.19	Formyl_trans_C	219	315	4.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00604	MTFMT, fmt	One carbon pool by folate	map00670
K00604	MTFMT, fmt	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016742	molecular_function	hydroxymethyl-, formyl- and related transferase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.594
	SRR3591706	second leaf	8.972
	SRR3591707	mature leaf	6.661
	SRR3591708	Shoot apex	14.717
	SRR3591709	Stem	5.031
	SRR3591710	White floral bud	14.220
	SRR3591711	White flower	9.464
	SRR3591712	Green floral bud	12.457
	SRR3591713	Yellow flower	6.567
SRP173429	SRR8316895	Juvenile bud stage	7.622
	SRR8316896	Juvenile bud stage	9.404
	SRR8316897	Juvenile bud stage	4.599
	SRR8316894	Third green stage	3.711
	SRR8316900	Third green stage	13.297
	SRR8316901	Third green stage	11.464
	SRR8316898	Complete white stage	5.269
	SRR8316899	Complete white stage	6.169
	SRR8316903	Complete white stage	6.575
	SRR8316902	Silver flowering stage	6.000
	SRR8316904	Silver flowering stage	7.917
	SRR8316905	Silver flowering stage	3.899
	SRR8316906	Gold flowering stage	11.994
	SRR8316907	Gold flowering stage	10.880
	SRR8316908	Gold flowering stage	9.881
SRP132670	SRR6706286	Control	9.319
	SRR6706287	Light intensity 50%	10.009
	SRR6706288	Light intensity 20%	11.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.415
	CNS0095593	Slightly white alabastrum(diploid) 2	7.419
	CNS0095594	Slightly white alabastrum(diploid) 3	10.138
	CNS0095595	Whole white alabastrum(diploid) 2	13.640
	CNS0095596	Whole white alabastrum(diploid) 3	14.595
	CNS0095597	Whole white alabastrum(diploid) 4	14.497
	CNS0095598	Silvery flower (diploied) 1	3.947
	CNS0095599	Silvery flower (diploied) 2	4.811
	CNS0095600	Silvery flower (diploied) 3	8.195
	CNS0095601	Golden flower (diploid) 1	3.882
	CNS0095602	Golden flower (diploid) 2	5.817
	CNS0095603	Golden flower (diploid) 3	4.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.577
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.625
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.103
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.399
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.685
	CNS0095610	Silvery flower (tetraploid) 1	7.064
	CNS0095611	Silvery flower (tetraploid) 2	6.662
	CNS0095612	Silvery flower (tetraploid) 3	13.720
	CNS0095613	Golden flower (tetraploid) 1	4.069
	CNS0095614	Golden flower (tetraploid) 2	3.933
	CNS0095615	Golden flower (tetraploid) 3	3.831
CRA001975	CRR073297	Stem 1	9.136
	CRR073298	Stem 2	6.866
	CRR073299	Stem 3	9.671
	CRR073300	Leaf 1	8.595
	CRR073301	Leaf 2	8.959
	CRR073302	Leaf 3	8.705
	CRR073303	Juvenile bud 1	6.757
	CRR073304	Juvenile bud 2	6.562
	CRR073305	Juvenile bud 3	2.850
	CRR073306	Third green 1	7.172
	CRR073307	Third green 2	5.959
	CRR073308	Third green 3	5.451
	CRR073309	Second white 1	6.174
	CRR073310	Second white 2	10.715
	CRR073311	Second white 3	7.427
	CRR073312	Silver flowering 1	9.502
	CRR073313	Silver flowering 2	5.043
	CRR073314	Silver flowering 3	5.786
	CRR073315	Gold flowering 1	8.834
	CRR073316	Gold flowering 2	9.424
	CRR073317	Gold flowering 3	5.942
	CRR073318	Tawny withering 1	4.813
	CRR073319	Tawny withering 2	4.195
	CRR073320	Tawny withering 3	4.174