Detail information of GWHGAAZE007337


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02704.10unnamed protein product [Coffea canephora]
Swissprottr|Q5XF57|Y5576_ARATH8E-64Probable receptor-like serine/threonine-protein kinase At5g57670
trEMBLtr|A0A068U3J3|A0A068U3J3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02704.1}
TAIR10AT5G37790.17E-165Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4344641643449090-
GWHAAZE00000002mRNA4344641643449090-
GWHAAZE00000002exon4344641643446760-
GWHAAZE00000002exon4344714143447288-
GWHAAZE00000002exon4344745743447536-
GWHAAZE00000002exon4344766343447835-
GWHAAZE00000002exon4344792543448182-
GWHAAZE00000002exon4344866743449090-
GWHAAZE00000002CDS4344866743449090-
GWHAAZE00000002CDS4344792543448182-
GWHAAZE00000002CDS4344766343447835-
GWHAAZE00000002CDS4344745743447536-
GWHAAZE00000002CDS4344714143447288-
GWHAAZE00000002CDS4344641643446760-
Transcript Sequence

Network for GWHGAAZE007337

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1404134.60E-44
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VI

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.979
SRR3591706second leaf8.220
SRR3591707mature leaf1.878
SRR3591708Shoot apex13.977
SRR3591709Stem55.191
SRR3591710White floral bud1.943
SRR3591711White flower1.427
SRR3591712Green floral bud1.439
SRR3591713Yellow flower0.127
SRP173429 SRR8316895Juvenile bud stage 4.047
SRR8316896Juvenile bud stage 3.342
SRR8316897Juvenile bud stage 0.955
SRR8316894Third green stage 1.167
SRR8316900Third green stage 1.510
SRR8316901Third green stage 2.214
SRR8316898Complete white stage 0.212
SRR8316899Complete white stage 2.893
SRR8316903Complete white stage 0.724
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.118
SRR8316905Silver flowering stage0.069
SRR8316906Gold flowering stage 0.093
SRR8316907Gold flowering stage 0.213
SRR8316908Gold flowering stage 0.148
SRP132670SRR6706286Control0.041
SRR6706287Light intensity 50%0.242
SRR6706288Light intensity 20%0.448
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.963
CNS0095593Slightly white alabastrum(diploid) 22.549
CNS0095594Slightly white alabastrum(diploid) 31.236
CNS0095595Whole white alabastrum(diploid) 21.475
CNS0095596Whole white alabastrum(diploid) 31.766
CNS0095597Whole white alabastrum(diploid) 41.140
CNS0095598Silvery flower (diploied) 13.310
CNS0095599Silvery flower (diploied) 22.559
CNS0095600Silvery flower (diploied) 30.712
CNS0095601Golden flower (diploid) 11.036
CNS0095602Golden flower (diploid) 21.414
CNS0095603Golden flower (diploid) 31.348
CNS0095604Slightly white alabastrum(tetraploid) 12.716
CNS0095605Slightly white alabastrum(tetraploid) 22.253
CNS0095606Slightly white alabastrum(tetraploid) 33.694
CNS0095607Whole white alabastrum(tetraploid) 11.285
CNS0095608Whole white alabastrum(tetraploid) 20.534
CNS0095609Whole white alabastrum(tetraploid) 31.485
CNS0095610Silvery flower (tetraploid) 10.230
CNS0095611Silvery flower (tetraploid) 20.558
CNS0095612Silvery flower (tetraploid) 30.464
CNS0095613Golden flower (tetraploid) 10.098
CNS0095614Golden flower (tetraploid) 20.336
CNS0095615Golden flower (tetraploid) 30.049
CRA001975CRR073297Stem 15.315
CRR073298Stem 23.550
CRR073299Stem 33.952
CRR073300Leaf 11.073
CRR073301Leaf 21.658
CRR073302Leaf 31.139
CRR073303Juvenile bud 10.893
CRR073304Juvenile bud 20.708
CRR073305Juvenile bud 30.626
CRR073306Third green 10.101
CRR073307Third green 20.051
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.166
CRR073311Second white 30.000
CRR073312Silver flowering 10.045
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.059
CRR073316Gold flowering 20.347
CRR073317Gold flowering 30.155
CRR073318Tawny withering 13.497
CRR073319Tawny withering 21.346
CRR073320Tawny withering 37.514