Gene detail

Detail information of GWHGAAZE007319

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264407.1	6.68956E-91	PREDICTED: transcription factor bHLH93-like [Vitis vinifera]
Swissprot	tr\|Q9LSL1\|BH093_ARATH	5E-85	Transcription factor bHLH93
trEMBL	tr\|A0A060A490\|A0A060A490_VITRI	2E-91	Inducer of CBF expression 4 {ECO:0000313\|EMBL:AIA58707.1}
TAIR10	AT5G65640.1	2E-69	beta HLH protein 93

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	42901012	42902135	-
GWHAAZE00000002	mRNA	42901012	42902135	-
GWHAAZE00000002	exon	42901012	42901098	-
GWHAAZE00000002	exon	42901292	42901459	-
GWHAAZE00000002	exon	42901568	42901747	-
GWHAAZE00000002	exon	42901944	42902135	-
GWHAAZE00000002	CDS	42901944	42902135	-
GWHAAZE00000002	CDS	42901568	42901747	-
GWHAAZE00000002	CDS	42901292	42901459	-
GWHAAZE00000002	CDS	42901012	42901098	-

Transcript Sequence
>GWHTAAZE007327 ATGGTGGAGGATGCACAAGCTACCCACGATGTCCCGGTTTTCAATGCGGGATCGTGTGGATCAGAGAGAAGAAACAAAGTCAAGAAGATAGACGGCCAGCCTTCAAAGAATCTAATGGCCGAAAGAAGGCGAAGGAAGCGATTAAACGACCGCCTTTCAATGCTTAGATCAATTGTTCCTAAAATAAGCAAGATGGATAGAACAGCTATCCTTGGAGATACCATAGATTATATGAAAGAGCTATTGGGAAAAATAAATAAATTGAAAGAAAATGATGATGAAGAAGCAACAAATAATATTGATCAAATGAAGTTATTGGGAAACTTCAATGAGCTAAAGATGAATGATGGAATTGTGAGGAATCCCCCTAAGTTCGACATAAAGAGGAAAAACGTAGATACGCAGATCGAGATTTGCTGTGCAACAAAGCCAGGATTGTTGTTTTCAACTGTGAACACAATTGAAGCATTAGGGCTTGACATTCACCAATGTGTTATAAGCTGCTTCAATGATTTCTCATTGCAAGCTTCCTGCTCTGAGGCAGCGGAGCATCGACCGATGATAAGTACTGAAGACATGAAGCAAGCATTATTCAGAAATGCTGGCTATGGGGGCAGATATCTGTAA

Network for GWHGAAZE007319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	38	81	6.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.921
	SRR3591710	White floral bud	1.053
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.132
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	1.723
	SRR8316901	Third green stage	0.256
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.289
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.129
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.671
	SRR6706287	Light intensity 50%	1.159
	SRR6706288	Light intensity 20%	0.230
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	1.144
	CNS0095596	Whole white alabastrum(diploid) 3	0.399
	CNS0095597	Whole white alabastrum(diploid) 4	3.373
	CNS0095598	Silvery flower (diploied) 1	0.614
	CNS0095599	Silvery flower (diploied) 2	0.938
	CNS0095600	Silvery flower (diploied) 3	0.460
	CNS0095601	Golden flower (diploid) 1	0.302
	CNS0095602	Golden flower (diploid) 2	0.089
	CNS0095603	Golden flower (diploid) 3	0.429
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.827
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.116
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	1.049
	CNS0095612	Silvery flower (tetraploid) 3	1.557
	CNS0095613	Golden flower (tetraploid) 1	0.179
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.813
CRA001975	CRR073297	Stem 1	0.226
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.252
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.661
	CRR073303	Juvenile bud 1	1.289
	CRR073304	Juvenile bud 2	2.144
	CRR073305	Juvenile bud 3	0.466
	CRR073306	Third green 1	1.105
	CRR073307	Third green 2	2.082
	CRR073308	Third green 3	0.958
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.381
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	1.568
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	1.162
	CRR073315	Gold flowering 1	0.757
	CRR073316	Gold flowering 2	0.580
	CRR073317	Gold flowering 3	0.105
	CRR073318	Tawny withering 1	2.824
	CRR073319	Tawny withering 2	1.794
	CRR073320	Tawny withering 3	3.211