Gene detail

Detail information of GWHGAAZE007303

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073660.1	9.6177E-116	PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X1 [Sesamum indicum]
Swissprot	tr\|P46604\|HAT22_ARATH	1E-88	Homeobox-leucine zipper protein HAT22
trEMBL	tr\|A5B626\|A5B626_VITVI	1E-108	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60988.1}
TAIR10	AT4G37790.1	2E-61	Homeobox-leucine zipper protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	42459215	42461452	+
GWHAAZE00000002	mRNA	42459215	42461452	+
GWHAAZE00000002	exon	42459215	42459661	+
GWHAAZE00000002	exon	42460304	42460383	+
GWHAAZE00000002	exon	42461173	42461452	+
GWHAAZE00000002	CDS	42459215	42459661	+
GWHAAZE00000002	CDS	42460304	42460383	+
GWHAAZE00000002	CDS	42461173	42461452	+

Transcript Sequence
>GWHTAAZE007311 ATCTTATCAATGGGATTCGAAAACATTTGCAACACCGGCCTCGTCCTAGGCCTAGGATTCTCATCGACGGTCAATATTACGACTCCGATCAAACCGAAAACCGAAGACTATAAACCCAAGAATAATCCACTCATAAATTTTGAGCCGCCGTCGCTGACCCTGGCACTTTCCGGCGAGGGGTACGGCGATGACTTAGTGGCAAAAAAGTTGAAAAGTGATGGTGACAATTTGTACGGTCAAGACAGTGGCGGATCATCGTACTCGAATGTGAGCGTGAAGAGGGAGAGAGAGGAAGAGGTGGAAACAGAGAGGGTAATTTCGTCGTCAAGAGCAATTATTAGCGATGAAGATGATGAGGGTATTCATGGAAGGAAAAAACTTAGGCTCACCAAAGCGCAATCGGCCCTTTTAGAGGAGAGCTTCAAACAACATACCACTCTCAATCCTAAACAAAAGCAAGAGTTGGCAAGGGAGCTAAAGCTTAGGCCTCGTCAAGTGGAGGTTTGGTTCCAGAACAGGAGAGCCAGGACAAAGCTGAAGCAAACTGAAGTGGACTGTGAGTACTTGAAGAAATGCTGTGAGACATTAACTGATGAAAATAGGAGACTACAAAAAGAACTACAAGAACTCAAATCATTAAAACAAGCAGCCCAGCCCCTCTACATGCAGCTGCCGGCCGCGACTCTCACAATATGCCCATCTTGCGAGAGGATGGGCGCCGAAAATACTTCTAAGAGCACCTTTAATATGCCCCCTAAGCCGCAATTCTATACTACTCCCTTCACTAATCCATCCGCAGCATGTTAG

Network for GWHGAAZE007303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	124	178	2.70E-16
PF02183.19	HALZ	180	215	1.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.412
	SRR3591706	second leaf	6.691
	SRR3591707	mature leaf	2.439
	SRR3591708	Shoot apex	9.185
	SRR3591709	Stem	19.481
	SRR3591710	White floral bud	47.669
	SRR3591711	White flower	16.175
	SRR3591712	Green floral bud	28.175
	SRR3591713	Yellow flower	2.496
SRP173429	SRR8316895	Juvenile bud stage	6.665
	SRR8316896	Juvenile bud stage	13.973
	SRR8316897	Juvenile bud stage	2.748
	SRR8316894	Third green stage	10.627
	SRR8316900	Third green stage	37.986
	SRR8316901	Third green stage	56.594
	SRR8316898	Complete white stage	37.149
	SRR8316899	Complete white stage	54.339
	SRR8316903	Complete white stage	65.653
	SRR8316902	Silver flowering stage	11.608
	SRR8316904	Silver flowering stage	10.479
	SRR8316905	Silver flowering stage	2.999
	SRR8316906	Gold flowering stage	2.144
	SRR8316907	Gold flowering stage	3.305
	SRR8316908	Gold flowering stage	6.496
SRP132670	SRR6706286	Control	42.681
	SRR6706287	Light intensity 50%	36.585
	SRR6706288	Light intensity 20%	28.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.165
	CNS0095593	Slightly white alabastrum(diploid) 2	32.416
	CNS0095594	Slightly white alabastrum(diploid) 3	18.132
	CNS0095595	Whole white alabastrum(diploid) 2	18.984
	CNS0095596	Whole white alabastrum(diploid) 3	21.963
	CNS0095597	Whole white alabastrum(diploid) 4	12.336
	CNS0095598	Silvery flower (diploied) 1	5.853
	CNS0095599	Silvery flower (diploied) 2	4.238
	CNS0095600	Silvery flower (diploied) 3	6.932
	CNS0095601	Golden flower (diploid) 1	2.617
	CNS0095602	Golden flower (diploid) 2	2.010
	CNS0095603	Golden flower (diploid) 3	3.314
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.734
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.833
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.875
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.394
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.331
	CNS0095610	Silvery flower (tetraploid) 1	10.023
	CNS0095611	Silvery flower (tetraploid) 2	2.375
	CNS0095612	Silvery flower (tetraploid) 3	9.682
	CNS0095613	Golden flower (tetraploid) 1	4.352
	CNS0095614	Golden flower (tetraploid) 2	3.411
	CNS0095615	Golden flower (tetraploid) 3	14.457
CRA001975	CRR073297	Stem 1	64.387
	CRR073298	Stem 2	81.297
	CRR073299	Stem 3	65.049
	CRR073300	Leaf 1	130.787
	CRR073301	Leaf 2	140.834
	CRR073302	Leaf 3	103.030
	CRR073303	Juvenile bud 1	76.084
	CRR073304	Juvenile bud 2	51.927
	CRR073305	Juvenile bud 3	92.429
	CRR073306	Third green 1	33.700
	CRR073307	Third green 2	46.794
	CRR073308	Third green 3	37.037
	CRR073309	Second white 1	6.484
	CRR073310	Second white 2	7.502
	CRR073311	Second white 3	3.550
	CRR073312	Silver flowering 1	5.613
	CRR073313	Silver flowering 2	3.051
	CRR073314	Silver flowering 3	4.971
	CRR073315	Gold flowering 1	1.732
	CRR073316	Gold flowering 2	0.587
	CRR073317	Gold flowering 3	0.815
	CRR073318	Tawny withering 1	25.485
	CRR073319	Tawny withering 2	16.432
	CRR073320	Tawny withering 3	14.521