Gene detail

Detail information of GWHGAAZE007266

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251672.1	1.3496E-147	PREDICTED: UBP1-associated protein 2A-like [Nelumbo nucifera]
Swissprot	tr\|O80678\|UBA2B_ARATH	2E-87	UBP1-associated protein 2B
trEMBL	tr\|M0RE71\|M0RE71_MUSAM	1E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P00440_001}
TAIR10	AT2G41060.2	4E-73	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	41631207	41633400	+
GWHAAZE00000002	mRNA	41631207	41633400	+
GWHAAZE00000002	exon	41631207	41631314	+
GWHAAZE00000002	exon	41631507	41631809	+
GWHAAZE00000002	exon	41632630	41633400	+
GWHAAZE00000002	CDS	41631207	41631314	+
GWHAAZE00000002	CDS	41631507	41631809	+
GWHAAZE00000002	CDS	41632630	41633400	+

Transcript Sequence
>GWHTAAZE007274 ATGGGGAAGAAGAGAAAGGCAACATCTACTCCCAAAGCAGTAGCAGTTGCAGTAGCAGAAGAATCAGAACCAAAACCAAAACCAACAAAGCTCCCCAAAGTAGCCGCAAGTGAGATACTAAGAAAGCTATTAGAACCATTCGGTAAAGACCAAATAATCGAATTCCTCAAAGAAGCCGCGTTGAAAGACCGATCAATCCTAAATAAAATCACCGAATCGGCCGAGTCCGATCCGGCCCACCGCAAGATCTTCATCCACGGCCTCGGCTGGGACGCTACCATCGACCAAGTTCTCGCCGTGTTCAAAAAACACGGCGAGATCGAGGAGTGCAAAGTCGTAACTGACAAAGTTACCGGACGTGCAAAAGGCTACGGATTCGTCCTCTTCAAAACCCGTGCTGGTGCTAAAAAGGCCCTAAAGGAGCGGCAGAAGAAGATCGGAAGCCGTATGACCTCTTGCCAGCTGGCATCTGCAGGTCCGGTCCCCAATCAGCTGCCAGCGGACTCCAGCGGCAGGAAAATCTTCGTCGCCAACGTTTTGCCCCACATCAATCCGGATGCGCTTCGAGTGCTATTTTCTAAATTTGGGGAGATTGAAGAAGGGCCCTTAGGGTTTGATTCTTCAACTGGCAAGTTCAAAGGTTTTGCAATTTTTGTGTATAAGACAATTGAGGGTTGTAATAAGGCATTAGAAGAGCCTGTAAAGATGTTTGAAGGTTGTCAGTTACAGTGTAGGCGAGCTACCAATAAGAATCAGAACCAAAATCAGGTCTCTGCTCCTCAATTGCAGCAGAGTGATGTTAATAGTGCTATCAGTTATGGTGTGAATCCTGGGTTTTATGCTCCTAATATGAATCAAGCTGCGGCTGTTATGATGGGCCAAAATCCTGCAATTGGATTGGCAAATCCCATGCTGTTTTCAGCTATGAATCAATCGGCTTTTGCTCCTTCAGTTGCTACTGGAATGACGAATCAATCATTGAGAATGAGTGGAAGTTATGGTATCAACAGTGTAAGCCCAAGTGTGATTGGGAGTTATGCTCCCCAAGCGGCTTTACAGGGAATGGGTGCTTATCAAAGTGGTCAATTGGGGTATTCTTCTGTAGGTGGGGTGACAGCGGCAGTTGCAGCAAGGTCTCAGCCTGGTTTGGGCACTACCTATTCATCCTATTTGGGCCGCTAG

Network for GWHGAAZE007266

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	83	146	6.50E-15
PF00076.23	RRM_1	174	242	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.255
	SRR3591706	second leaf	18.354
	SRR3591707	mature leaf	23.505
	SRR3591708	Shoot apex	31.018
	SRR3591709	Stem	34.665
	SRR3591710	White floral bud	33.720
	SRR3591711	White flower	38.428
	SRR3591712	Green floral bud	38.898
	SRR3591713	Yellow flower	38.703
SRP173429	SRR8316895	Juvenile bud stage	22.282
	SRR8316896	Juvenile bud stage	27.330
	SRR8316897	Juvenile bud stage	13.576
	SRR8316894	Third green stage	13.321
	SRR8316900	Third green stage	38.401
	SRR8316901	Third green stage	36.973
	SRR8316898	Complete white stage	16.730
	SRR8316899	Complete white stage	65.285
	SRR8316903	Complete white stage	28.584
	SRR8316902	Silver flowering stage	16.137
	SRR8316904	Silver flowering stage	20.739
	SRR8316905	Silver flowering stage	14.485
	SRR8316906	Gold flowering stage	36.332
	SRR8316907	Gold flowering stage	29.569
	SRR8316908	Gold flowering stage	37.166
SRP132670	SRR6706286	Control	29.886
	SRR6706287	Light intensity 50%	29.528
	SRR6706288	Light intensity 20%	31.972
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.917
	CNS0095593	Slightly white alabastrum(diploid) 2	22.092
	CNS0095594	Slightly white alabastrum(diploid) 3	22.154
	CNS0095595	Whole white alabastrum(diploid) 2	25.845
	CNS0095596	Whole white alabastrum(diploid) 3	22.433
	CNS0095597	Whole white alabastrum(diploid) 4	21.641
	CNS0095598	Silvery flower (diploied) 1	27.642
	CNS0095599	Silvery flower (diploied) 2	20.270
	CNS0095600	Silvery flower (diploied) 3	42.634
	CNS0095601	Golden flower (diploid) 1	24.782
	CNS0095602	Golden flower (diploid) 2	37.303
	CNS0095603	Golden flower (diploid) 3	42.327
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.646
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.583
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.199
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.845
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.420
	CNS0095610	Silvery flower (tetraploid) 1	37.519
	CNS0095611	Silvery flower (tetraploid) 2	40.807
	CNS0095612	Silvery flower (tetraploid) 3	29.494
	CNS0095613	Golden flower (tetraploid) 1	23.512
	CNS0095614	Golden flower (tetraploid) 2	32.080
	CNS0095615	Golden flower (tetraploid) 3	40.205
CRA001975	CRR073297	Stem 1	35.259
	CRR073298	Stem 2	34.395
	CRR073299	Stem 3	37.618
	CRR073300	Leaf 1	37.890
	CRR073301	Leaf 2	34.029
	CRR073302	Leaf 3	44.047
	CRR073303	Juvenile bud 1	50.685
	CRR073304	Juvenile bud 2	41.503
	CRR073305	Juvenile bud 3	45.741
	CRR073306	Third green 1	26.915
	CRR073307	Third green 2	26.584
	CRR073308	Third green 3	28.009
	CRR073309	Second white 1	19.316
	CRR073310	Second white 2	29.426
	CRR073311	Second white 3	22.115
	CRR073312	Silver flowering 1	20.608
	CRR073313	Silver flowering 2	13.891
	CRR073314	Silver flowering 3	14.445
	CRR073315	Gold flowering 1	22.486
	CRR073316	Gold flowering 2	23.871
	CRR073317	Gold flowering 3	10.196
	CRR073318	Tawny withering 1	34.145
	CRR073319	Tawny withering 2	23.950
	CRR073320	Tawny withering 3	35.269