Gene detail

Detail information of GWHGAAZE007226

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653644.1	2.6922E-176	PREDICTED: uncharacterized protein LOC100248184 [Vitis vinifera]
Swissprot	tr\|P14233\|TGA1B_TOBAC	7E-27	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)
trEMBL	tr\|F6HQP7\|F6HQP7_VITVI	1E-176	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57128.1}
TAIR10	AT2G40950.1	8E-98	Basic-leucine zipper (bZIP) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40837951	40845290	+
GWHAAZE00000002	mRNA	40837951	40845290	+
GWHAAZE00000002	exon	40837951	40838239	+
GWHAAZE00000002	exon	40838751	40840169	+
GWHAAZE00000002	exon	40844755	40845290	+
GWHAAZE00000002	CDS	40837951	40838239	+
GWHAAZE00000002	CDS	40838751	40840169	+
GWHAAZE00000002	CDS	40844755	40845290	+

Transcript Sequence
>GWHTAAZE007234 ATGGCGGATCCAGTGGTCGCCGATCCGATTTGTCTAGACCACACCGACTTCGACAGTATCCTCCCAATTCCACCTCTCGATCCCAACTTCTTTGATCAAGACCTCAACTTCTCCTTCAACGAAGACTTCGATTTCGATATCGAAGACCTTGATTTCACTCTAGACGATCTCTACTTCCCCTCAGATAACGAAGAATACTTTCCAAATTTCACTTCCAATCCCCAAGATTCCTCCTCTTCCATCATCAATCAGGCCGTTTCTCAACCGGACATCTGTCAGGCTACTACAGGTGATCTGAGCTCCGGTAGTGATAGGGTTTTGGATTTGATAGAGTTGAAATCTGGTCAAGTTTCTGGATTTGAAAGCTCAGATGCTGCTAGGGCTTTGAATTTCCCCTCAGAGGATTTAGAAAATCTCAATGGTTCTGGCTTCTCGTCGTCTCAGGGTTCAGGTAATAACTGCCGTTCTAATGAATTAGAATCTCCTAATGATGATGATCGCTTGCTTGATTCTGGTGATTGTGCTCGGTCGCGTAATTCACCCGATTCTGCAAATAATTCAGTAACTAGGGTTAATAATAATAAAGAAATTTCATCGGAGGAATTGGATAAAAGTTGTTTGTTTAAGAGGAGGAAGGAGAACGAGGATGTGACATCTGAACCAAGGAAGCGAAAGCATAGGAGGTCAAGTGTTGAGCAATCGTATGAATCGAATCCGAAAAATGATGAGGAAGAGAAGAAGAAGGCAAGGTTGATGAGGAATAGAGAGAGTGCGCAACTTTCTAGAGAGAGAAAGAAGCATTATGTTGGGGAATTGGAAGGAAAGTTGAGGAAAATGAATTCCACAGTTCATGATTTGAATGCTAAGATATCGTATATAATGGCAGAAAATGCCAGTTTGAAGCAACAATTGAGTGGTGGTGGTATGTACCCGCATCCACCCATGGCTTACCCATGGGTTCCTTATACGCCTTATTTTGTGAATCCACAATCTCAAGTGCCATTAGTTCCCATTCCCAAATTGAAACCCCAACAACCAGTGTCAGCACCAAAGGCTAAGAAGGTGCAGGGTAAGAAAATAGAAGGTAAAACTAAGAAGGTCGCAAGCATTAGTTTTGTGGGTTTGTTGTTTTTTATCTTACTTTTTGGTGGATTGGTTCCAATGGTGAATGTAAAATATAGAGATTATATTGAGAATAAGCATTATGATCAGCAACATGGGAGACGAGGGGCCATTAATGGTCACTTGAATGGAACTAGCCACGACTTAGTAATAGGGTTATCAAGTGGGAAATTAGGCCATGGAAAAGAGTTCACTAACTCCTATTGTGGGAGAGGTCAAGTTGTTGGAGGACTAGAATCAAATATTGAGTTTTCTGGTTCAGGCAATTCTAGTGAGCCTCTTTTTGCTTCTTTATATGTTCCGAGGAATGACACACTAGTGAAGATTGATGGCAATTTGATAATTCACTCTGTTATGGCTACTGAGAAAGCCATTGCGGCATCCCATGATGATCAAGAAATGGGAAAGAACAACAGAGAAACTAGTTTGGTTGTTGCATCCAATATGGGTCCTGCTATATCTATTCCTGGGGTTGGGAGGAATGGAAGGCATGGTCAGAGGGCTCTTGGGTCAGGTTCTGGAGATGATTTGAAGTCAACTGCAGCTGAAGGTGAGCTGCAAAAATGGTTCCGTGAAGGTCTCACAGTGAGATATCTTACTTTACGTGATCGTGCCCATTGTGCTTTCATTATTACGAATGTTACCATTTTCTTCACATTAATTTCATATTCCCATTGTACAGGGCCAATGTTAAGTTCAGGCATGTGCACTGAAGTATTCCAGTTTGATATTTTACCTCCTCCTCCGGGAAGTGTAATTCCAGCCACATCAGCAAAGAACATCTCTGCGGAAAACCCTAAAAATCTTAACAAAGGGAAGAATAGAAGAATCCTTCACAATCTTCCTCCTATTCCCCTCCCTGAATCCACCCACAACATCACCAAAGAACGTGTTGGTAAAGAAAACTCTCGCGGAAAGAATAATTCTCTCTCCTCCTCAATGGTTGTTTCCGTGCTCGTTGATCCCCGAGAAACAAGCAACAATGAAGATAGTGAGGGCATTATGGGGAAAAAGTCCCTCTCTAGGGTTTTTGTTGTTCTTTTGTTGGACGGTGTTAAGTATGTCACTTACTCGTGCGTGATTCCGCTAATGGGATCTACTACTCATCTAGTGAGTACTTGA

Network for GWHGAAZE007226

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	243	304	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.310
	SRR3591706	second leaf	12.422
	SRR3591707	mature leaf	15.902
	SRR3591708	Shoot apex	14.360
	SRR3591709	Stem	31.268
	SRR3591710	White floral bud	37.292
	SRR3591711	White flower	37.395
	SRR3591712	Green floral bud	29.811
	SRR3591713	Yellow flower	33.962
SRP173429	SRR8316895	Juvenile bud stage	20.923
	SRR8316896	Juvenile bud stage	31.681
	SRR8316897	Juvenile bud stage	15.360
	SRR8316894	Third green stage	9.486
	SRR8316900	Third green stage	23.659
	SRR8316901	Third green stage	27.179
	SRR8316898	Complete white stage	13.640
	SRR8316899	Complete white stage	47.547
	SRR8316903	Complete white stage	25.762
	SRR8316902	Silver flowering stage	13.836
	SRR8316904	Silver flowering stage	19.573
	SRR8316905	Silver flowering stage	9.509
	SRR8316906	Gold flowering stage	30.410
	SRR8316907	Gold flowering stage	27.900
	SRR8316908	Gold flowering stage	31.078
SRP132670	SRR6706286	Control	20.260
	SRR6706287	Light intensity 50%	19.665
	SRR6706288	Light intensity 20%	19.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.527
	CNS0095593	Slightly white alabastrum(diploid) 2	19.417
	CNS0095594	Slightly white alabastrum(diploid) 3	24.363
	CNS0095595	Whole white alabastrum(diploid) 2	20.206
	CNS0095596	Whole white alabastrum(diploid) 3	15.181
	CNS0095597	Whole white alabastrum(diploid) 4	19.027
	CNS0095598	Silvery flower (diploied) 1	23.764
	CNS0095599	Silvery flower (diploied) 2	24.592
	CNS0095600	Silvery flower (diploied) 3	44.379
	CNS0095601	Golden flower (diploid) 1	24.676
	CNS0095602	Golden flower (diploid) 2	47.301
	CNS0095603	Golden flower (diploid) 3	46.741
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.475
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.447
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.882
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.068
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.146
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.306
	CNS0095610	Silvery flower (tetraploid) 1	36.684
	CNS0095611	Silvery flower (tetraploid) 2	34.451
	CNS0095612	Silvery flower (tetraploid) 3	38.631
	CNS0095613	Golden flower (tetraploid) 1	18.729
	CNS0095614	Golden flower (tetraploid) 2	26.693
	CNS0095615	Golden flower (tetraploid) 3	31.588
CRA001975	CRR073297	Stem 1	18.101
	CRR073298	Stem 2	19.126
	CRR073299	Stem 3	18.014
	CRR073300	Leaf 1	23.360
	CRR073301	Leaf 2	22.250
	CRR073302	Leaf 3	17.267
	CRR073303	Juvenile bud 1	22.904
	CRR073304	Juvenile bud 2	21.300
	CRR073305	Juvenile bud 3	26.907
	CRR073306	Third green 1	18.867
	CRR073307	Third green 2	15.728
	CRR073308	Third green 3	18.336
	CRR073309	Second white 1	19.016
	CRR073310	Second white 2	25.341
	CRR073311	Second white 3	30.005
	CRR073312	Silver flowering 1	31.614
	CRR073313	Silver flowering 2	26.846
	CRR073314	Silver flowering 3	32.063
	CRR073315	Gold flowering 1	15.077
	CRR073316	Gold flowering 2	26.981
	CRR073317	Gold flowering 3	17.063
	CRR073318	Tawny withering 1	27.294
	CRR073319	Tawny withering 2	28.658
	CRR073320	Tawny withering 3	25.622