Gene detail

Detail information of GWHGAAZE007218

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010043341.1	0	PREDICTED: violaxanthin de-epoxidase, chloroplastic [Eucalyptus grandis]
Swissprot	tr\|Q9SM43\|VDE_SPIOL	0	Violaxanthin de-epoxidase, chloroplastic (Precursor)
trEMBL	tr\|A0A059D3P0\|A0A059D3P0_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW85348.1}
TAIR10	AT1G08550.2	2E-164	non-photochemical quenching 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40750184	40754335	+
GWHAAZE00000002	mRNA	40750184	40754335	+
GWHAAZE00000002	exon	40750184	40750350	+
GWHAAZE00000002	exon	40751313	40751409	+
GWHAAZE00000002	exon	40752069	40752460	+
GWHAAZE00000002	exon	40753124	40753139	+
GWHAAZE00000002	exon	40753811	40754335	+
GWHAAZE00000002	CDS	40750184	40750350	+
GWHAAZE00000002	CDS	40751313	40751409	+
GWHAAZE00000002	CDS	40752069	40752460	+
GWHAAZE00000002	CDS	40753124	40753139	+
GWHAAZE00000002	CDS	40753811	40754335	+

Transcript Sequence
>GWHTAAZE007226 GAACTAAAGAGCTTTGATTTGCGAAGGACAGTAACATGCATACTTCGGAGGCAATGGAGCCAATTCATAACAGTAGCTCTCATACTGTCAGGCATATTCTTTGTTATTCCAACAGCTGATGCAGTAGACGCCCTCAAAACTTGTTCTTGCTTACTGAAGGAGTGCAGGGTGGAACTTGCAAAGTGCATTGCGAACCCATCGTGTGCAGCTAATGTGGCTTGCCTCCAAACCTGCAACAATAGACCTGATGAGACTGAGTGCCAGATAAAATGTGGGGATTTGTTTGAGAACAGCGTTGTAGACCAGTTCAACGAGTGCGCAGTCTCACGAAAGAAATGCGTGCCCCAAAAATCAGACGTGGGTGAATTTCCGGTCCCTGCTCCTGATTTGCTAGTTAAAAGCTTCAACATCAACGATTTCACTGGGAAGTGGTATATAACTAGCGGCTTAAATCCTACATTTGACGCCTTTGATTGCCAATTGCATGAGTTCCATATGGAATCAAACAAACTTGTTGGGAATTTGACATGGCGAATTCGGACCCCAGATGGTGGATTCTTTACTCGATCAGCTGTTCAGAAATTTGTACAAGATCCGACCCAACCAGGCATTCTGTACAATCACAATAACGAGTTTCTTCACTACGAAGATGACTGTACCTATGCTATTCAGTACTTACACAGGTACATTTTGTCTTCAAAAATAGAAAATACAGCGGACGACTATATATTTGTATATTACCGAGGCAGGAACGACGCATGGGATGGATACGGTGGCTCAGTTATATACACAAGAAGTTCAGTTCTGCCGGAAAACATTGTGCCCGAATTAGAAAGGGCAGCTCAAAGTGTAGGGCGCAACTTCAAAGACTATATCAGAACAGACAACACTTGTGGGCCCGAGCCTCCCCTCATAGATAGACTGGAGAAGACGGCCGAAGAAGGAGAGAAAACAATCATAAGAGAGGTCGAGCAGATTGAGGAAGAGGTTGAGAAGGAGGTTGAGAAGGTGGAGTCCACTGAGAGGAGCTTGTTCCAGCGGCTAGCAGAAGGGTTTGAAGAGCTCAAAAAGGATGAAGAAAATTTCATCAGGGAGCTGAGTAAAGAAGAGATGGATGTTTTGAGTGAGCTTAAAATGGAAGCTGGAGAACTGGAAAAGCTCTTTGGAAGAGCATTGCCATTGAGGAAGTTGAGATAA

Network for GWHGAAZE007218

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07137.12	VDE	47	296	9.00E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09839	VDE, NPQ1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009507	cellular_component	chloroplast
GO:0046422	molecular_function	violaxanthin de-epoxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.238
	SRR3591706	second leaf	17.750
	SRR3591707	mature leaf	15.685
	SRR3591708	Shoot apex	11.121
	SRR3591709	Stem	6.089
	SRR3591710	White floral bud	3.125
	SRR3591711	White flower	4.347
	SRR3591712	Green floral bud	2.151
	SRR3591713	Yellow flower	2.766
SRP173429	SRR8316895	Juvenile bud stage	8.071
	SRR8316896	Juvenile bud stage	10.066
	SRR8316897	Juvenile bud stage	5.759
	SRR8316894	Third green stage	3.672
	SRR8316900	Third green stage	12.150
	SRR8316901	Third green stage	12.773
	SRR8316898	Complete white stage	5.510
	SRR8316899	Complete white stage	16.172
	SRR8316903	Complete white stage	9.157
	SRR8316902	Silver flowering stage	5.979
	SRR8316904	Silver flowering stage	7.534
	SRR8316905	Silver flowering stage	3.796
	SRR8316906	Gold flowering stage	8.013
	SRR8316907	Gold flowering stage	3.822
	SRR8316908	Gold flowering stage	6.881
SRP132670	SRR6706286	Control	17.363
	SRR6706287	Light intensity 50%	12.914
	SRR6706288	Light intensity 20%	12.837
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.887
	CNS0095593	Slightly white alabastrum(diploid) 2	10.827
	CNS0095594	Slightly white alabastrum(diploid) 3	8.293
	CNS0095595	Whole white alabastrum(diploid) 2	6.728
	CNS0095596	Whole white alabastrum(diploid) 3	4.395
	CNS0095597	Whole white alabastrum(diploid) 4	8.594
	CNS0095598	Silvery flower (diploied) 1	17.910
	CNS0095599	Silvery flower (diploied) 2	16.431
	CNS0095600	Silvery flower (diploied) 3	19.648
	CNS0095601	Golden flower (diploid) 1	16.706
	CNS0095602	Golden flower (diploid) 2	16.561
	CNS0095603	Golden flower (diploid) 3	16.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.252
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.984
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.918
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.119
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.562
	CNS0095610	Silvery flower (tetraploid) 1	15.607
	CNS0095611	Silvery flower (tetraploid) 2	17.946
	CNS0095612	Silvery flower (tetraploid) 3	3.585
	CNS0095613	Golden flower (tetraploid) 1	9.146
	CNS0095614	Golden flower (tetraploid) 2	11.898
	CNS0095615	Golden flower (tetraploid) 3	2.454
CRA001975	CRR073297	Stem 1	17.500
	CRR073298	Stem 2	13.859
	CRR073299	Stem 3	12.214
	CRR073300	Leaf 1	11.611
	CRR073301	Leaf 2	12.177
	CRR073302	Leaf 3	7.436
	CRR073303	Juvenile bud 1	9.675
	CRR073304	Juvenile bud 2	7.520
	CRR073305	Juvenile bud 3	9.842
	CRR073306	Third green 1	2.533
	CRR073307	Third green 2	2.509
	CRR073308	Third green 3	3.542
	CRR073309	Second white 1	2.250
	CRR073310	Second white 2	2.589
	CRR073311	Second white 3	2.137
	CRR073312	Silver flowering 1	0.980
	CRR073313	Silver flowering 2	1.042
	CRR073314	Silver flowering 3	1.384
	CRR073315	Gold flowering 1	54.815
	CRR073316	Gold flowering 2	83.141
	CRR073317	Gold flowering 3	38.112
	CRR073318	Tawny withering 1	10.970
	CRR073319	Tawny withering 2	11.972
	CRR073320	Tawny withering 3	11.426