Gene detail

Detail information of GWHGAAZE007208

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010036386.1	3.3513E-125	PREDICTED: transcription factor PCL1-like [Eucalyptus grandis]
Swissprot	tr\|Q9SNB4\|PCL1_ARATH	2E-52	Transcription factor LUX
trEMBL	tr\|A0A059A3P3\|A0A059A3P3_EUCGR	1E-125	Uncharacterized protein {ECO:0000313\|EMBL:KCW47935.1}
TAIR10	AT3G10760.1	1E-58	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40541354	40543081	+
GWHAAZE00000002	mRNA	40541354	40543081	+
GWHAAZE00000002	exon	40541354	40541788	+
GWHAAZE00000002	exon	40542620	40543081	+
GWHAAZE00000002	CDS	40541354	40541788	+
GWHAAZE00000002	CDS	40542620	40543081	+

Transcript Sequence
>GWHTAAZE007216 ATGAGAGAAGATGATGAATCTAATTGGTTTTCAAAGTGGGAAGAACAACTTCCATGCCCAGAAGACCTCATACCCTTATCCCAAACCCTAATCACCCCTGATCTAGCAATAGCCTTCGATATTCGGACCCACAATAATAATAATAATAACCCACAGCAACAAATAGGGACGGGGCAGGGGATTTCTCCGGCCCCCGCTCAGTCATCGCAGCCGAGCTCGGTGGAATTCGATTCCGGGGAGTTCGGAGGAGGCGGCACTGGGGATGAGCAGGCGAGGACGCTGAAGAGGCCGAGGCTGGTGTGGACCCCACAGCTGCACAAGAGGTTTGTGGATGCTGTGGCTCACCTTGGGATCAAGAATGCTGTGCCCAAGACCATAATGCAGCTCATGAGTGTTGATGGGTTGACCCGTGAGAATGTTGCCAGTCATTTACAGAAGTACAGGCTTTACCTGAAACGTATGCAGGGGATTTCTAGTGGTGGCGGTGGAGTCCCCGGAGGAATGGTATCCGGCGGTGATTCGGCCACTGATCGCTTGTTTGCCAGTTCTCCGGTGCCAGCACACTTCCTCCACCCTGTTCGCCCCAATTCAGACCACTTCTTGCCGTTAATGCCAGTGGCGGCACTACAGCAGCACCACCACCACCACCAGCAGCAGATGGCAGCTGCTGCTGCTGCTGCAGCCGTGGCCGGACATCCGCAACTACAGCCACAGTATCGGCACATGGGCCATTTTGGGTCGCCGCCCAACGGGCAATTCGAGCATCCGTTCCTAGCAAGACAGCGTTTGGGTATGCAAGTGAATAACACTGTTCCGTCTTATGTGGAGGATTTGGAATCAGCTACAGCAGCCACTGGGAGGAGAGTTCTTACTCTATTTCCAACTGGGGATGATTAG

Network for GWHGAAZE007208

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	100	148	2.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.510
	SRR3591706	second leaf	4.779
	SRR3591707	mature leaf	5.676
	SRR3591708	Shoot apex	6.465
	SRR3591709	Stem	17.243
	SRR3591710	White floral bud	21.158
	SRR3591711	White flower	14.890
	SRR3591712	Green floral bud	29.573
	SRR3591713	Yellow flower	6.391
SRP173429	SRR8316895	Juvenile bud stage	8.452
	SRR8316896	Juvenile bud stage	11.854
	SRR8316897	Juvenile bud stage	3.019
	SRR8316894	Third green stage	5.147
	SRR8316900	Third green stage	16.806
	SRR8316901	Third green stage	14.550
	SRR8316898	Complete white stage	5.464
	SRR8316899	Complete white stage	21.670
	SRR8316903	Complete white stage	10.655
	SRR8316902	Silver flowering stage	3.785
	SRR8316904	Silver flowering stage	4.481
	SRR8316905	Silver flowering stage	2.608
	SRR8316906	Gold flowering stage	3.978
	SRR8316907	Gold flowering stage	5.591
	SRR8316908	Gold flowering stage	7.144
SRP132670	SRR6706286	Control	12.121
	SRR6706287	Light intensity 50%	11.355
	SRR6706288	Light intensity 20%	15.220
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.013
	CNS0095593	Slightly white alabastrum(diploid) 2	9.948
	CNS0095594	Slightly white alabastrum(diploid) 3	9.150
	CNS0095595	Whole white alabastrum(diploid) 2	11.639
	CNS0095596	Whole white alabastrum(diploid) 3	11.460
	CNS0095597	Whole white alabastrum(diploid) 4	15.950
	CNS0095598	Silvery flower (diploied) 1	14.302
	CNS0095599	Silvery flower (diploied) 2	5.311
	CNS0095600	Silvery flower (diploied) 3	12.214
	CNS0095601	Golden flower (diploid) 1	6.131
	CNS0095602	Golden flower (diploid) 2	10.918
	CNS0095603	Golden flower (diploid) 3	9.083
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.259
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.629
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.457
	CNS0095610	Silvery flower (tetraploid) 1	9.670
	CNS0095611	Silvery flower (tetraploid) 2	12.775
	CNS0095612	Silvery flower (tetraploid) 3	28.423
	CNS0095613	Golden flower (tetraploid) 1	11.696
	CNS0095614	Golden flower (tetraploid) 2	10.260
	CNS0095615	Golden flower (tetraploid) 3	11.544
CRA001975	CRR073297	Stem 1	6.771
	CRR073298	Stem 2	7.928
	CRR073299	Stem 3	10.011
	CRR073300	Leaf 1	8.689
	CRR073301	Leaf 2	9.184
	CRR073302	Leaf 3	7.205
	CRR073303	Juvenile bud 1	7.741
	CRR073304	Juvenile bud 2	5.627
	CRR073305	Juvenile bud 3	8.782
	CRR073306	Third green 1	2.223
	CRR073307	Third green 2	2.987
	CRR073308	Third green 3	2.849
	CRR073309	Second white 1	2.199
	CRR073310	Second white 2	1.034
	CRR073311	Second white 3	2.389
	CRR073312	Silver flowering 1	2.183
	CRR073313	Silver flowering 2	1.567
	CRR073314	Silver flowering 3	2.075
	CRR073315	Gold flowering 1	2.464
	CRR073316	Gold flowering 2	4.529
	CRR073317	Gold flowering 3	5.782
	CRR073318	Tawny withering 1	8.477
	CRR073319	Tawny withering 2	7.554
	CRR073320	Tawny withering 3	7.027