Detail information of GWHGAAZE007201


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI32808.38.5208E-109unnamed protein product [Vitis vinifera]
Swissprottr|Q43697|TBB5_MAIZE4E-110Tubulin beta-5 chain
trEMBLtr|M0Y723|M0Y723_HORVD6E-109Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_66337.1}
TAIR10AT5G12250.14E-79beta-6 tubulin

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4038598840386810-
GWHAAZE00000002mRNA4038598840386810-
GWHAAZE00000002exon4038641740386810-
GWHAAZE00000002exon4038598840386058-
GWHAAZE00000002CDS4038641740386810-
GWHAAZE00000002CDS4038598840386058-
Transcript Sequence

Network for GWHGAAZE007201

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.26Tubulin31542.60E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07375TUBB Phagosome map04145
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
GO:0005200molecular_functionstructural constituent of cytoskeleton

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf305.259
SRR3591706second leaf70.598
SRR3591707mature leaf16.783
SRR3591708Shoot apex112.859
SRR3591709Stem154.845
SRR3591710White floral bud96.349
SRR3591711White flower28.502
SRR3591712Green floral bud244.195
SRR3591713Yellow flower12.533
SRP173429 SRR8316895Juvenile bud stage 85.385
SRR8316896Juvenile bud stage 93.273
SRR8316897Juvenile bud stage 48.519
SRR8316894Third green stage 47.545
SRR8316900Third green stage 158.217
SRR8316901Third green stage 130.476
SRR8316898Complete white stage 33.595
SRR8316899Complete white stage 163.028
SRR8316903Complete white stage 43.835
SRR8316902Silver flowering stage2.927
SRR8316904Silver flowering stage8.645
SRR8316905Silver flowering stage1.953
SRR8316906Gold flowering stage 4.994
SRR8316907Gold flowering stage 5.209
SRR8316908Gold flowering stage 7.755
SRP132670SRR6706286Control210.472
SRR6706287Light intensity 50%228.352
SRR6706288Light intensity 20%249.617
CNP0000432CNS0095592Slightly white alabastrum(diploid) 198.545
CNS0095593Slightly white alabastrum(diploid) 2101.354
CNS0095594Slightly white alabastrum(diploid) 378.550
CNS0095595Whole white alabastrum(diploid) 283.680
CNS0095596Whole white alabastrum(diploid) 3113.541
CNS0095597Whole white alabastrum(diploid) 459.600
CNS0095598Silvery flower (diploied) 128.182
CNS0095599Silvery flower (diploied) 240.354
CNS0095600Silvery flower (diploied) 339.761
CNS0095601Golden flower (diploid) 120.377
CNS0095602Golden flower (diploid) 228.627
CNS0095603Golden flower (diploid) 331.688
CNS0095604Slightly white alabastrum(tetraploid) 1169.140
CNS0095605Slightly white alabastrum(tetraploid) 2132.988
CNS0095606Slightly white alabastrum(tetraploid) 3442.570
CNS0095607Whole white alabastrum(tetraploid) 162.445
CNS0095608Whole white alabastrum(tetraploid) 252.314
CNS0095609Whole white alabastrum(tetraploid) 3321.417
CNS0095610Silvery flower (tetraploid) 172.043
CNS0095611Silvery flower (tetraploid) 255.231
CNS0095612Silvery flower (tetraploid) 344.482
CNS0095613Golden flower (tetraploid) 19.473
CNS0095614Golden flower (tetraploid) 280.489
CNS0095615Golden flower (tetraploid) 319.469
CRA001975CRR073297Stem 1235.189
CRR073298Stem 2242.987
CRR073299Stem 3351.649
CRR073300Leaf 1350.114
CRR073301Leaf 2281.580
CRR073302Leaf 3451.172
CRR073303Juvenile bud 1448.572
CRR073304Juvenile bud 2500.790
CRR073305Juvenile bud 3405.934
CRR073306Third green 148.064
CRR073307Third green 281.671
CRR073308Third green 393.738
CRR073309Second white 111.926
CRR073310Second white 26.366
CRR073311Second white 32.805
CRR073312Silver flowering 11.551
CRR073313Silver flowering 23.144
CRR073314Silver flowering 31.408
CRR073315Gold flowering 152.484
CRR073316Gold flowering 257.906
CRR073317Gold flowering 372.923
CRR073318Tawny withering 1208.778
CRR073319Tawny withering 2106.907
CRR073320Tawny withering 3321.577