Gene detail

Detail information of GWHGAAZE007159

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275980.1	PREDICTED: regulatory protein NPR5 [Vitis vinifera]
Swissprot	tr\|Q9ZVC2\|NPR5_ARATH	Regulatory protein NPR5
trEMBL	tr\|F6HLP4\|F6HLP4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55300.1}
TAIR10	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	39427192	39430100	+
GWHAAZE00000002	mRNA	39427192	39430100	+
GWHAAZE00000002	exon	39427192	39427678	+
GWHAAZE00000002	exon	39429073	39430100	+
GWHAAZE00000002	CDS	39427192	39427678	+
GWHAAZE00000002	CDS	39429073	39430100	+

Transcript Sequence
>GWHTAAZE007167 ATGTCACTGGAAGACTCCATAAGATCTCTCTCTCTAGATTACCTCAACCTCTTAATCAACGGCCAAGCATTCAGTGACGTCACGTTCAGCGTCGAGGGCCGGTTAGTCCACGCCCACCGGTGCATTTTAGCAGCCAGGAGTCTCTTCTTCCGTAAATTCTTCTGCGGGTCGGACACGTCGGGTCCGGATCCTTCGTCGAGGGGGTTGATATCGTCGCCGAGGGGTTCGCAAGGAGGAGGGGTGATAATACCGGTGAATTCGGTGGGGTATGAGGTGTTTATGCTGATCCTTCAGTTCTTGTACTCTGGGCAAGTCTCGATTGTACCTCAGAAACATGATGAGCCTCGGCCTAATTGTGGGGAGAGGGGGTGTTGGCACACGCATTGCTCCTCTGCCGTTGATCTTGCTCTAGATACCCTCTCCGCAGCTAGATCGTTTGGTGTTGAACAACTCGCATTGCTGACCCAGGTACGTATCAAATCTGACTTCTTTCATTTATTTTTATTTTTATTTTTATTTTTATTTTTGCAGAAACAATTGGCAAGTATTGTAGAGAAGGCCTCAATTGAAGATGTAATGAAAGTTTTAATAGCTTCGAGAAAACAAGAGATGCACCAACTATGGACAACTTGTTCCCATTTGGTAGCCAAATCCGGCCTCCCACCTGAAATCCTAGCTAAACACCTCCCTATCGAGGTGGTCGCGAAGATAGAGGAGCTCCGGCTCAAGTCCTCCCTCTCCCGCCGCTCCCTCCTCCCGCACCACCACCCCCACCATCAGCACCACCACCAAGACATTGTGGATCTTGAGGACCAAAAGATCCGAAGGATGAGACGAGCCTTGGACTCGTCAGACGTGGAGCTAGTCAAGCTCATGGTAATGGGAGAAGGGCTAAACCTAGACGAGGCCTTAGCCCTACATTATGCGGTGGAGAGTTGTAGCCGGGAAGTGGTCAAAGCATTACTAGAACTAGGTGCAGCGGATGTTAACTACCCGGCTGGGCCCGCAGGGAAAACCCCGCTCCACGTTGCGGCTGAGATGGTTTCACCAGATATGGTATCGGTGCTCCTCGACCACCATGCTGACCCTAATGTTAGAACTGTAGATGGGATTACACCCCTCGATATACTCAGAACCCTAACTTCGGATTTTTTGTTCAAAGGGGCTGTACCAGGATTGACGCACATTGAGCCAAACAAGCTTAGGCTGTGCTTGGAGCTTGTTCAGTCGGCAGCTTTGGTGATTTCGCGTGAAGAAGGCGGAGGAAACTGTCCTCCGCCCTCTACCACTGCGATATACCCACCAATGGGGGATGATCATAATAGTCGTGGTGGTGGTAGTAGTAGTAACATGGGTAACCTTAATCTCGACTCGAGGTTGGTCTATTTGAACCTTGGTGCAGCACAAATGGAAAGAGACGAGCATCAACGTAACCAGAGGGAAACCATCAATAGGCATGGTTCTCAAGGTGGTTGTGACCCATCATCAATGTATCACCACCCTCATGACTATTAG

Network for GWHGAAZE007159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	16	111	4.20E-14
PF11900.9	DUF3420	219	278	1.70E-14
PF12796.8	Ank_2	284	366	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF

KEGG pathway

KO	Enzyme	pathway	mapID
K14508	NPR1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.418
	SRR3591706	second leaf	0.833
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	4.179
	SRR3591709	Stem	5.414
	SRR3591710	White floral bud	2.487
	SRR3591711	White flower	4.048
	SRR3591712	Green floral bud	2.814
	SRR3591713	Yellow flower	0.242
SRP173429	SRR8316895	Juvenile bud stage	2.200
	SRR8316896	Juvenile bud stage	1.230
	SRR8316897	Juvenile bud stage	0.428
	SRR8316894	Third green stage	0.792
	SRR8316900	Third green stage	1.193
	SRR8316901	Third green stage	0.890
	SRR8316898	Complete white stage	0.230
	SRR8316899	Complete white stage	4.111
	SRR8316903	Complete white stage	1.011
	SRR8316902	Silver flowering stage	0.150
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.059
	SRR8316906	Gold flowering stage	0.233
	SRR8316907	Gold flowering stage	0.272
	SRR8316908	Gold flowering stage	0.316
SRP132670	SRR6706286	Control	2.855
	SRR6706287	Light intensity 50%	2.810
	SRR6706288	Light intensity 20%	3.404
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.823
	CNS0095593	Slightly white alabastrum(diploid) 2	1.684
	CNS0095594	Slightly white alabastrum(diploid) 3	1.237
	CNS0095595	Whole white alabastrum(diploid) 2	1.203
	CNS0095596	Whole white alabastrum(diploid) 3	0.507
	CNS0095597	Whole white alabastrum(diploid) 4	1.297
	CNS0095598	Silvery flower (diploied) 1	0.387
	CNS0095599	Silvery flower (diploied) 2	1.117
	CNS0095600	Silvery flower (diploied) 3	0.584
	CNS0095601	Golden flower (diploid) 1	0.733
	CNS0095602	Golden flower (diploid) 2	0.752
	CNS0095603	Golden flower (diploid) 3	1.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.085
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.164
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.738
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.289
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.486
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.645
	CNS0095610	Silvery flower (tetraploid) 1	2.329
	CNS0095611	Silvery flower (tetraploid) 2	2.423
	CNS0095612	Silvery flower (tetraploid) 3	0.912
	CNS0095613	Golden flower (tetraploid) 1	0.129
	CNS0095614	Golden flower (tetraploid) 2	2.959
	CNS0095615	Golden flower (tetraploid) 3	0.179
CRA001975	CRR073297	Stem 1	2.187
	CRR073298	Stem 2	1.993
	CRR073299	Stem 3	3.503
	CRR073300	Leaf 1	3.090
	CRR073301	Leaf 2	3.456
	CRR073302	Leaf 3	3.484
	CRR073303	Juvenile bud 1	1.796
	CRR073304	Juvenile bud 2	1.066
	CRR073305	Juvenile bud 3	4.608
	CRR073306	Third green 1	0.240
	CRR073307	Third green 2	0.206
	CRR073308	Third green 3	0.608
	CRR073309	Second white 1	0.113
	CRR073310	Second white 2	0.054
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.261
	CRR073318	Tawny withering 1	1.915
	CRR073319	Tawny withering 2	3.475
	CRR073320	Tawny withering 3	1.887