Gene detail

Detail information of GWHGAAZE007093

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009597085.1	PREDICTED: calcium-dependent protein kinase 32-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q38873\|CDPK7_ARATH	Calcium-dependent protein kinase 7
trEMBL	tr\|E3VJP8\|E3VJP8_TOBAC	Calcium-dependent protein kinase 8 {ECO:0000313\|EMBL:ADO79931.1}
TAIR10	AT5G19450.2	calcium-dependent protein kinase 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	38116806	38121470	+
GWHAAZE00000002	mRNA	38116806	38121470	+
GWHAAZE00000002	exon	38116806	38117474	+
GWHAAZE00000002	exon	38118129	38118252	+
GWHAAZE00000002	exon	38118350	38118493	+
GWHAAZE00000002	exon	38118571	38118879	+
GWHAAZE00000002	exon	38119086	38119201	+
GWHAAZE00000002	exon	38119592	38119759	+
GWHAAZE00000002	exon	38120715	38120948	+
GWHAAZE00000002	exon	38121318	38121470	+
GWHAAZE00000002	five_prime_UTR	38116806	38116967	+
GWHAAZE00000002	CDS	38116968	38117474	+
GWHAAZE00000002	CDS	38118129	38118252	+
GWHAAZE00000002	CDS	38118350	38118493	+
GWHAAZE00000002	CDS	38118571	38118879	+
GWHAAZE00000002	CDS	38119086	38119201	+
GWHAAZE00000002	CDS	38119592	38119759	+
GWHAAZE00000002	CDS	38120715	38120948	+
GWHAAZE00000002	CDS	38121318	38121470	+

Transcript Sequence
>GWHTAAZE007101 CAATGATCTCTTCAACACGCCATTTTATTCCCCTTCTCGTCCTCTTCTCCCCTAAACCCTCTTCTCTCCCTTTAAAATCCCCTCCTATTTCCGCCACATTCTCTTCAATTCCAACCCCCAAACCCAAAAAAGATTCTTCCAAATCAATCAATTTTCTGATCAATGGGGAACTGCTATGCAATACCACAAGATCCTTCTGTAAAGAAACAAAGGAGAAAAAACAAGCAAAACCCATTCACAGTTGATTACATACCCAACAAATCCTCCAAAGGCGGATACAAATCCTACGTACTCGACAACCCGACCGGTCACGCGATTAACTTGGATTACGAACTGGGCCAAGAACTTGGTCGAGGCGAATTCGGGATTACGTATTTGTGCACAGAAAAATTAACAGGGGAAATGTACGCGTGTAAGTCGATATCGAAGAAGAAGCTGAGGACAAGGGTTGATGTTGAAGATGTGAAGAGGGAAGTTGAGATTATGAAGCAATTGCCTAAGCATGTGAATATTGTGAGCTTGAAGGATACTTATGAGGATGAGAGTGGGGTTCATTTGGTAATGGAGTTGTGTGAGGGTGGGGAGCTTTTTGATAGGATTGTTGCTAGAGGGCATTATACTGAGAGGGCGGCTGCTGCTGTTACTAGGACCATTGTTGAGGTTATTCAGATATGCCACATGCACGGGGTTATGCATAGGGATCTTAAACCCGAGAACTTTTTGTTCGGGAACAAGAAAGAAACAGCACCCTTAAAGGCCATTGATTTCGGGTTGTCGGTATTCTTTAAACCTGGTGAGAAATTTAATGAGATTGTAGGAAGTCCTTATTACATGGCTCCGGAGGTTCTAAAACGAGACTACGGTCCAGAGGTAGATGTTTGGAGTGCCGGAGTTATCCTTTATATCTTACTTTGTGGTGTCCCGCCATTTTGGGCAGAGGTGGATATAGTGGGAGGGGGTAGCCGGGTAGGTTTGTCCCAGCCCCCAAATCATAAAATATATAATTGTAGCACTCAAACATTTCTCTTTTTGTACATGTCTTCTTCGCCATCATCCCTTCTTGCCTTTGATTCTATGGGTTGTTTCTGTGCAGAAACTGAACAAGGGGTAGCACAATCAATTATTCGATCGGTGGTTGATCTTGAAAGGGACCCTTGGCATATGGTTTCCGATAATGCAAAGGACCTTGTGAAGAAGATGCTAAATCCAGATCCAAAGCACCGCCTTACTGCTCAGGAAGTCCTAGATCATCCTTGGATACAAAATTCCAAAAAGGCTCCAAATGTTTCTTTAGGTGAAACTGTGAAAGCAAGGCTAAAGCAGTTCTCTATAATGAACAAGCTGAAGAAAAGAGCTCTTAGGGTTATCGCTGAGCAATTGTCGGCGGAAGAAGTGGCAGACATTAAGGAGGGGTTCCAAGTGATGGACACCGGCAATAAGGGGAAGATAAACATTGAGGAGTTGAAAGCTGGGTTGGAAAAGCTTGGCCATCAGGTTCCCGATGCTGATCTACAAGTTCTAATGGATGCTGGCGATGTAGATAAAGACGGATACTTGAACTATGGAGAGTTCATAGCGATTTCCGTTCACCTTAAAAAAATGGGAGATGGCGATGATCACCTCCAAGAAGCCTTCACGTTTTTTGATTTAAACCGAAGTGGTTACATTGAGATTGAAGAGCTGAGGCATGCTTTAGCTGACGAAGTTGACACCAATAATGAAGAAGTCATCAATGCGATTATTCAAGATGTTGACACGGACAAGGATGGACGTATTAGTTATGAGGAATTTGCCGCAATGATGAAGTCTGGCACGGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGACAAATACAATAGTCTCAGCATGGAGTTAATGAAAGACGGATCGTTGAAATTAAAAGAGGGAAGATAA

Network for GWHGAAZE007093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	56	366	1.40E-70
PF13833.7	EF-hand_8	426	475	1.60E-06
PF13499.7	EF-hand_7	485	548	1.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.239
	SRR3591706	second leaf	1.274
	SRR3591707	mature leaf	2.354
	SRR3591708	Shoot apex	0.770
	SRR3591709	Stem	4.612
	SRR3591710	White floral bud	1.774
	SRR3591711	White flower	3.953
	SRR3591712	Green floral bud	2.536
	SRR3591713	Yellow flower	16.561
SRP173429	SRR8316895	Juvenile bud stage	4.559
	SRR8316896	Juvenile bud stage	4.092
	SRR8316897	Juvenile bud stage	1.406
	SRR8316894	Third green stage	1.565
	SRR8316900	Third green stage	4.406
	SRR8316901	Third green stage	4.118
	SRR8316898	Complete white stage	0.568
	SRR8316899	Complete white stage	7.728
	SRR8316903	Complete white stage	0.773
	SRR8316902	Silver flowering stage	3.013
	SRR8316904	Silver flowering stage	2.641
	SRR8316905	Silver flowering stage	1.345
	SRR8316906	Gold flowering stage	23.844
	SRR8316907	Gold flowering stage	10.193
	SRR8316908	Gold flowering stage	26.623
SRP132670	SRR6706286	Control	6.593
	SRR6706287	Light intensity 50%	7.907
	SRR6706288	Light intensity 20%	5.043
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.874
	CNS0095593	Slightly white alabastrum(diploid) 2	17.631
	CNS0095594	Slightly white alabastrum(diploid) 3	13.889
	CNS0095595	Whole white alabastrum(diploid) 2	12.600
	CNS0095596	Whole white alabastrum(diploid) 3	2.623
	CNS0095597	Whole white alabastrum(diploid) 4	6.056
	CNS0095598	Silvery flower (diploied) 1	18.084
	CNS0095599	Silvery flower (diploied) 2	9.854
	CNS0095600	Silvery flower (diploied) 3	6.459
	CNS0095601	Golden flower (diploid) 1	19.089
	CNS0095602	Golden flower (diploid) 2	16.075
	CNS0095603	Golden flower (diploid) 3	16.868
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.898
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.623
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.358
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.653
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.304
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.113
	CNS0095610	Silvery flower (tetraploid) 1	2.387
	CNS0095611	Silvery flower (tetraploid) 2	0.817
	CNS0095612	Silvery flower (tetraploid) 3	1.078
	CNS0095613	Golden flower (tetraploid) 1	3.845
	CNS0095614	Golden flower (tetraploid) 2	4.682
	CNS0095615	Golden flower (tetraploid) 3	1.083
CRA001975	CRR073297	Stem 1	3.658
	CRR073298	Stem 2	2.693
	CRR073299	Stem 3	0.906
	CRR073300	Leaf 1	3.532
	CRR073301	Leaf 2	3.529
	CRR073302	Leaf 3	1.452
	CRR073303	Juvenile bud 1	3.046
	CRR073304	Juvenile bud 2	0.899
	CRR073305	Juvenile bud 3	1.936
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.021
	CRR073308	Third green 3	0.217
	CRR073309	Second white 1	0.394
	CRR073310	Second white 2	1.348
	CRR073311	Second white 3	0.842
	CRR073312	Silver flowering 1	3.911
	CRR073313	Silver flowering 2	2.035
	CRR073314	Silver flowering 3	2.478
	CRR073315	Gold flowering 1	1.154
	CRR073316	Gold flowering 2	3.317
	CRR073317	Gold flowering 3	3.462
	CRR073318	Tawny withering 1	13.531
	CRR073319	Tawny withering 2	23.953
	CRR073320	Tawny withering 3	5.317