Detail information of GWHGAAZE007089


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002526718.10nucleic acid binding protein, putative [Ricinus communis]
Swissprottr|P93755|C3H30_ARATH0Zinc finger CCCH domain-containing protein 30
trEMBLtr|B9SL49|B9SL49_RICCO0Nucleic acid binding protein, putative {ECO:0000313|EMBL:EEF35632.1}
TAIR10AT2G41900.10CCCH-type zinc finger protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3802340638025412-
GWHAAZE00000002mRNA3802340638025412-
GWHAAZE00000002exon3802481338025412-
GWHAAZE00000002exon3802340638024776-
GWHAAZE00000002CDS3802481338025412-
GWHAAZE00000002CDS3802340638024776-
Transcript Sequence

Network for GWHGAAZE007089

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_2181231.00E-09
PF00642.25zf-CCCH2672876.40E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE007089.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3050100150200250300350400450500Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.376
SRR3591706second leaf7.422
SRR3591707mature leaf25.150
SRR3591708Shoot apex12.674
SRR3591709Stem33.595
SRR3591710White floral bud58.613
SRR3591711White flower76.186
SRR3591712Green floral bud35.064
SRR3591713Yellow flower40.116
SRP173429 SRR8316895Juvenile bud stage 8.596
SRR8316896Juvenile bud stage 8.958
SRR8316897Juvenile bud stage 4.693
SRR8316894Third green stage 5.012
SRR8316900Third green stage 16.160
SRR8316901Third green stage 13.004
SRR8316898Complete white stage 12.208
SRR8316899Complete white stage 30.081
SRR8316903Complete white stage 25.889
SRR8316902Silver flowering stage22.690
SRR8316904Silver flowering stage28.055
SRR8316905Silver flowering stage13.300
SRR8316906Gold flowering stage 49.184
SRR8316907Gold flowering stage 46.673
SRR8316908Gold flowering stage 54.486
SRP132670SRR6706286Control31.085
SRR6706287Light intensity 50%26.586
SRR6706288Light intensity 20%25.699
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.431
CNS0095593Slightly white alabastrum(diploid) 26.902
CNS0095594Slightly white alabastrum(diploid) 36.146
CNS0095595Whole white alabastrum(diploid) 26.750
CNS0095596Whole white alabastrum(diploid) 35.290
CNS0095597Whole white alabastrum(diploid) 46.687
CNS0095598Silvery flower (diploied) 119.966
CNS0095599Silvery flower (diploied) 210.750
CNS0095600Silvery flower (diploied) 346.296
CNS0095601Golden flower (diploid) 114.628
CNS0095602Golden flower (diploid) 238.060
CNS0095603Golden flower (diploid) 335.633
CNS0095604Slightly white alabastrum(tetraploid) 18.825
CNS0095605Slightly white alabastrum(tetraploid) 27.152
CNS0095606Slightly white alabastrum(tetraploid) 320.364
CNS0095607Whole white alabastrum(tetraploid) 17.789
CNS0095608Whole white alabastrum(tetraploid) 24.030
CNS0095609Whole white alabastrum(tetraploid) 311.300
CNS0095610Silvery flower (tetraploid) 130.282
CNS0095611Silvery flower (tetraploid) 236.089
CNS0095612Silvery flower (tetraploid) 3128.957
CNS0095613Golden flower (tetraploid) 114.566
CNS0095614Golden flower (tetraploid) 227.068
CNS0095615Golden flower (tetraploid) 326.189
CRA001975CRR073297Stem 134.259
CRR073298Stem 230.455
CRR073299Stem 336.266
CRR073300Leaf 138.570
CRR073301Leaf 238.430
CRR073302Leaf 328.821
CRR073303Juvenile bud 136.169
CRR073304Juvenile bud 237.884
CRR073305Juvenile bud 358.443
CRR073306Third green 1275.499
CRR073307Third green 2171.858
CRR073308Third green 3211.849
CRR073309Second white 1398.274
CRR073310Second white 2400.336
CRR073311Second white 3447.511
CRR073312Silver flowering 1362.128
CRR073313Silver flowering 2417.629
CRR073314Silver flowering 3344.164
CRR073315Gold flowering 126.787
CRR073316Gold flowering 239.336
CRR073317Gold flowering 333.976
CRR073318Tawny withering 145.088
CRR073319Tawny withering 249.001
CRR073320Tawny withering 341.724