Gene detail

Detail information of GWHGAAZE007067

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282499.1	0	PREDICTED: actin-related protein 2/3 complex subunit 1A [Vitis vinifera]
Swissprot	tr\|O80856\|ARC1A_ARATH	2E-165	Actin-related protein 2/3 complex subunit 1A
trEMBL	tr\|E0CTY0\|E0CTY0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22046.3}
TAIR10	AT2G30910.3	2E-125	actin-related protein C1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	37460028	37475745	+
GWHAAZE00000002	mRNA	37460028	37475745	+
GWHAAZE00000002	exon	37460028	37460132	+
GWHAAZE00000002	exon	37463197	37463273	+
GWHAAZE00000002	exon	37464149	37464238	+
GWHAAZE00000002	exon	37464958	37465027	+
GWHAAZE00000002	exon	37465612	37465685	+
GWHAAZE00000002	exon	37465785	37465830	+
GWHAAZE00000002	exon	37466598	37466679	+
GWHAAZE00000002	exon	37472617	37472705	+
GWHAAZE00000002	exon	37472801	37472886	+
GWHAAZE00000002	exon	37474066	37474126	+
GWHAAZE00000002	exon	37474267	37474352	+
GWHAAZE00000002	exon	37474484	37474542	+
GWHAAZE00000002	exon	37475570	37475630	+
GWHAAZE00000002	exon	37475715	37475745	+
GWHAAZE00000002	CDS	37460028	37460132	+
GWHAAZE00000002	CDS	37463197	37463273	+
GWHAAZE00000002	CDS	37464149	37464238	+
GWHAAZE00000002	CDS	37464958	37465027	+
GWHAAZE00000002	CDS	37465612	37465685	+
GWHAAZE00000002	CDS	37465785	37465830	+
GWHAAZE00000002	CDS	37466598	37466679	+
GWHAAZE00000002	CDS	37472617	37472705	+
GWHAAZE00000002	CDS	37472801	37472886	+
GWHAAZE00000002	CDS	37474066	37474126	+
GWHAAZE00000002	CDS	37474267	37474352	+
GWHAAZE00000002	CDS	37474484	37474542	+
GWHAAZE00000002	CDS	37475570	37475630	+
GWHAAZE00000002	CDS	37475715	37475745	+

Transcript Sequence
>GWHTAAZE007075 ATGTCCGTTTTCTTTGCAGTGATTGCTTTCTGTCCAAACAATAATGAAGTACACATCTATAGATTATTGGAAGAGAATTGGGAGAGGATACATGTTCTTCAAAAGCATGATCAAATTGTTTCGGGGATAGACTGGAGTGTTACATCAAACAGAATAGTTACTGTATCTCATGATCGGAATTCTCCACTTATCCTTCCTTCAGGAAACAAGTTTGCAGTTGGAAGTGGAGCTAAAACTGTTTGTATATGCTACTATGAGCAAGAGAATAACTGGTGGGTCAGTAAGCTTATCAGGAAAAGGCATGATTCTTCTGTGACGAGTGTTGCTTGGCATCCAAATAATATTCTCCTTGCTACAACATCTACGGATGGAAAATGCAGACTGTTCTCCACTTTTATTAAAGGTGTTGATAAAAAGAATTCAAGTAAAGGCTCTTCTTCATCAGATACAAAATTTGGAGAGCAAATCATTCAGCTTGATCTATCATTTTCCTGGGCATTTGGGGTCAAATGGTCTCCGAGTGGCAATACCTTAGCTTATGTAGGTCATAATTCAATAATCTACTTTGTTGATGAAGTTTGTCCTAATCCTTCTGCTCAAAGTGTAGCATTCCGTGATTTGCCTCTTCGAGATGTTTTATTTGTCTCTGAGAGAATGGTCATTGGTGTGGGATATGACTGCAATCCAATGGTTTTTGCTGCTGATGAAAGAGGAATATGGAGCTTTGTGAGGTTCCTTGGTGAAAAGAAAACATCTTCAAGTCCAAAATATGGTTCACAGTTTTCAGCATTTGGAAAACTATATGGCCAATCGAAACAAGGAAACAGCAACAACACTGGTGGAATTGTACACGAGAATTGTATCAATTGTATTCTGCCACTTAAGAGAGCAGGGGACTCTAAGGTGACCCGCTTCAGCACTTCAGGGCTTGATGGAAAATTAGTTATATGGGATTTAAAGAACGAAGTGGATTTATCTGTATACTTGTTAGTACCACAGAAGGAATTCATGTTGTAG

Network for GWHGAAZE007067

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0256	GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase GOslim:molecular_function GO:0009089 lysine biosynthetic process via diaminopimelate GOslim:biological_process Ubiquitin_DWD family Ubiquitin_DWD family map04136 Autophagy - other map04810 Regulation of actin cytoskeleton map04068 FoxO signaling pathway map04621 NOD-like receptor signaling pathway map04137 Mitophagy - animal map04666 Fc gamma R-mediated phagocytosis map04371 Apelin signaling pathway map04139 Mitophagy - yeast map04727 GABAergic synapse map04140 Autophagy - animal map04138 Autophagy - yeast map04212 Longevity regulating pathway - worm

Module ID

Function Annotation

CFinderModule0256

GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase GOslim:molecular_function
GO:0009089 lysine biosynthetic process via diaminopimelate GOslim:biological_process
Ubiquitin_DWD family Ubiquitin_DWD family
map04136 Autophagy - other
map04810 Regulation of actin cytoskeleton
map04068 FoxO signaling pathway
map04621 NOD-like receptor signaling pathway
map04137 Mitophagy - animal
map04666 Fc gamma R-mediated phagocytosis
map04371 Apelin signaling pathway
map04139 Mitophagy - yeast
map04727 GABAergic synapse
map04140 Autophagy - animal
map04138 Autophagy - yeast
map04212 Longevity regulating pathway - worm

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	100	129	3.70E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K05757	ARPC1A_B	Endocytosis	map04144
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.032
	SRR3591706	second leaf	9.479
	SRR3591707	mature leaf	6.060
	SRR3591708	Shoot apex	16.810
	SRR3591709	Stem	22.735
	SRR3591710	White floral bud	19.620
	SRR3591711	White flower	19.629
	SRR3591712	Green floral bud	19.486
	SRR3591713	Yellow flower	26.779
SRP173429	SRR8316895	Juvenile bud stage	11.710
	SRR8316896	Juvenile bud stage	18.008
	SRR8316897	Juvenile bud stage	8.027
	SRR8316894	Third green stage	8.169
	SRR8316900	Third green stage	23.621
	SRR8316901	Third green stage	22.968
	SRR8316898	Complete white stage	13.521
	SRR8316899	Complete white stage	32.044
	SRR8316903	Complete white stage	19.016
	SRR8316902	Silver flowering stage	8.046
	SRR8316904	Silver flowering stage	10.108
	SRR8316905	Silver flowering stage	6.502
	SRR8316906	Gold flowering stage	16.319
	SRR8316907	Gold flowering stage	16.634
	SRR8316908	Gold flowering stage	19.526
SRP132670	SRR6706286	Control	10.741
	SRR6706287	Light intensity 50%	10.606
	SRR6706288	Light intensity 20%	11.389
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.978
	CNS0095593	Slightly white alabastrum(diploid) 2	15.668
	CNS0095594	Slightly white alabastrum(diploid) 3	17.867
	CNS0095595	Whole white alabastrum(diploid) 2	16.245
	CNS0095596	Whole white alabastrum(diploid) 3	16.798
	CNS0095597	Whole white alabastrum(diploid) 4	14.658
	CNS0095598	Silvery flower (diploied) 1	18.153
	CNS0095599	Silvery flower (diploied) 2	20.728
	CNS0095600	Silvery flower (diploied) 3	26.618
	CNS0095601	Golden flower (diploid) 1	21.952
	CNS0095602	Golden flower (diploid) 2	28.189
	CNS0095603	Golden flower (diploid) 3	23.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.519
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.050
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.999
	CNS0095610	Silvery flower (tetraploid) 1	37.885
	CNS0095611	Silvery flower (tetraploid) 2	51.066
	CNS0095612	Silvery flower (tetraploid) 3	50.623
	CNS0095613	Golden flower (tetraploid) 1	40.607
	CNS0095614	Golden flower (tetraploid) 2	46.056
	CNS0095615	Golden flower (tetraploid) 3	81.491
CRA001975	CRR073297	Stem 1	7.588
	CRR073298	Stem 2	7.327
	CRR073299	Stem 3	4.028
	CRR073300	Leaf 1	9.977
	CRR073301	Leaf 2	6.912
	CRR073302	Leaf 3	5.801
	CRR073303	Juvenile bud 1	7.150
	CRR073304	Juvenile bud 2	5.494
	CRR073305	Juvenile bud 3	4.626
	CRR073306	Third green 1	2.395
	CRR073307	Third green 2	2.071
	CRR073308	Third green 3	1.510
	CRR073309	Second white 1	8.496
	CRR073310	Second white 2	4.067
	CRR073311	Second white 3	4.164
	CRR073312	Silver flowering 1	4.501
	CRR073313	Silver flowering 2	2.891
	CRR073314	Silver flowering 3	3.742
	CRR073315	Gold flowering 1	2.644
	CRR073316	Gold flowering 2	5.687
	CRR073317	Gold flowering 3	1.798
	CRR073318	Tawny withering 1	7.832
	CRR073319	Tawny withering 2	7.379
	CRR073320	Tawny withering 3	8.473