Gene detail

Detail information of GWHGAAZE007048

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI30038.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9FG24\|SRF2_ARATH	0	Protein STRUBBELIG-RECEPTOR FAMILY 2 (Precursor)
trEMBL	tr\|F6HLK6\|F6HLK6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55262.1}
TAIR10	AT5G06820.1	2E-164	STRUBBELIG-receptor family 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	37122890	37133523	+
GWHAAZE00000002	mRNA	37122890	37133523	+
GWHAAZE00000002	exon	37122890	37123008	+
GWHAAZE00000002	exon	37123364	37123611	+
GWHAAZE00000002	exon	37123892	37123951	+
GWHAAZE00000002	exon	37124490	37124622	+
GWHAAZE00000002	exon	37124711	37124782	+
GWHAAZE00000002	exon	37125115	37125180	+
GWHAAZE00000002	exon	37125303	37125374	+
GWHAAZE00000002	exon	37125469	37125540	+
GWHAAZE00000002	exon	37126234	37126305	+
GWHAAZE00000002	exon	37126382	37126447	+
GWHAAZE00000002	exon	37127251	37127555	+
GWHAAZE00000002	exon	37129151	37129341	+
GWHAAZE00000002	exon	37129945	37130210	+
GWHAAZE00000002	exon	37130720	37130800	+
GWHAAZE00000002	exon	37131512	37131659	+
GWHAAZE00000002	exon	37132321	37132460	+
GWHAAZE00000002	exon	37132544	37132700	+
GWHAAZE00000002	exon	37133323	37133523	+
GWHAAZE00000002	CDS	37122890	37123008	+
GWHAAZE00000002	CDS	37123364	37123611	+
GWHAAZE00000002	CDS	37123892	37123951	+
GWHAAZE00000002	CDS	37124490	37124622	+
GWHAAZE00000002	CDS	37124711	37124782	+
GWHAAZE00000002	CDS	37125115	37125180	+
GWHAAZE00000002	CDS	37125303	37125374	+
GWHAAZE00000002	CDS	37125469	37125540	+
GWHAAZE00000002	CDS	37126234	37126305	+
GWHAAZE00000002	CDS	37126382	37126447	+
GWHAAZE00000002	CDS	37127251	37127555	+
GWHAAZE00000002	CDS	37129151	37129341	+
GWHAAZE00000002	CDS	37129945	37130210	+
GWHAAZE00000002	CDS	37130720	37130800	+
GWHAAZE00000002	CDS	37131512	37131659	+
GWHAAZE00000002	CDS	37132321	37132460	+
GWHAAZE00000002	CDS	37132544	37132700	+
GWHAAZE00000002	CDS	37133323	37133523	+

Transcript Sequence
>GWHTAAZE007056 ATGGGGTCCGACGCACCAGGGAGACGGGGTTCAACAAAGGAGTGTGTACTGGTCGATCAATCGACAGAAGAGCGTGTGCGCGCACGACAATGTCGTCATAAAAGCAGCAACAGTGTGAAGAACTACCAAACAGCGCCTAAAGCCAAATGCTTCTTCAAGGCTTCAGCTATGGGAATCGCTCATAACTACCTAACGGATTTAGCCGATGTGGCTGCTGACTCAGCAAGATTCTTCGCTACTAATTTACCCCTGCTCTCTCTCTCTCTCTCTCTCTACACACACATACATATATATATACATGCATCGAGAGAAAAAACAAAAGTTTCTTCAAAACCCAAAACCCTAATTCACTTTGTAACCACTCTTTTTTTCTTCTCGATCGCCATCCTCAATTTCAAGGCTTCTGCTCACACTGACCCTCTCGATGTTCAAGCTCTTCAAGATCTTTACATATCTCTGAACAGTTCACCCCAGTTTAAAGGATGGAGATCGGATGGTGGGGACCCGTGTGAAGAATCATGGATTGGAGTTTCTTGCGATGGGTCGTCTGTTATTTACATTATTATTCCTGGACTAGCACTCACTGGATATCTTGGGTCTGAGCTCTCTAATCTCCATAATTTGAAACAACTGGATATCAGTTCCAATAACATTCAGGGTGAAATTCCAGACAGCTTACCTCTTACTCTTACACACTTAAACTTGGCATGCAACAATTTTAGCCAAAGCATACCCTACTCCTTAACTTCCATGAAAAATCTTCGTCACCTGAATCTAAGCCACAATTCATTGTCTGGACCTATTGGGAATGTATTCACTGGCCTAACGTATCTAAAAGAAATGGATTTGTCATACAATAAATTCACAGGAAATCTACCTAGCTCGTTTGGATCTTTGTCAAATCTTACAGGATTGTACTTGCAAGGTAATGAATTTTATGGATCAGTAAACTTTTTGGCTGGGCTCCTGCTATCTGACCTGTTCGACCAAGGAGTAAACCAACCAGCATGGGATTTTCCACTGGAAAATATGCCTCAGGAGAAGAATTTTAGTAGTCCACCGACTACTGAGTCGAGTGCCATTGAGACCTATCCTTTTCATAAATTCGCCAAACACAAGAAAGGACTAGGTCCTGGAGGAATTGCTGTTGTGGTTGGTGGAGTTGCTCTAGTGGCAATGTGTGCAGCCCTCTTTATCGCTATTCGCATCCATCATTCTCGGGCACATGTTCTCACGCACTTGGGGAGCAGTAAGTGGACAGAATGCTCAACTAGTAGTACCAGAGGGAACCCCTTTCGTACTAAAACATTAAGAGTATCTCGAACTAGTTTCTCTAGTAAGTGCAATATCCCAGCTGGTCTGAAAATCTACACTGTGACAGAAATTCACTCAGCAACCAACGGCTTCAGCAAAGCAAACCTTCTTGGAGAAGGGTCCATTGGTTCTGTTTACAAAGCTGAGTTCCCTGATGGACAAATTCTTGCCGCGAAGAAGATTAACACAGTTTCACTTTCATTCAATGAAGAAGAACAATTCCTGGAGGTGACTTGGAATGCTGCTCGTTTGAGGCACCCAAATATTGTAAAACTCGTTGGGTACTGTGTCGAGCACCCCCAACATCTCCTCGTGTACGAGTATGTTAGAAACTTGTCTCTGGGTGATGCTTTGCACTGTGAAGCATACGAGCCTTTATCTTGGCACCTCCGTCTAGGAATTTCTCTTGGTGTTGCTCGTGCTTTAGAGGCAATAGCTCATGCTTTTGAGAAAACTGGCTTTGGTGAGGAAATGGGTGCCAATGCGGTATGGTGGAGTAGACTTTGTTGCTATTTGCATTCCACATGCAATCCTCAAGTCGCTCATAGCAACTTAAAAGCTTCCAACATTTTACTTGATGAAGATTTTGTGCCTCGTTTATGTGATTGTGGCTTAGCTGTTTTAAAGCCCCTTACCAGCAACAGTGTTAAGCTTAAGGCTAGTGAAATGGCTATATGTGATACTGCCTATGTTGCACCGGAACGCAATGAACCTGGAATTGTTAACACAAAGGGTGACATCTACTCCTTTGGAGTTTTGCTTTTAGAGCTTTTTACTGGAAGGAGGCCTTTTGACAGTTCAAAACCAATGGAAGAGCAATCACTGGTTAATTGGGCTTCGTCTCGGCTCCATGACAATGCGTCTTTGGCGCAGATAGTTGATCCAGCCATTAATGAAGCTATTCCCTTGAAAGTTCTCCCCCGACTTGCAAACATTGTCTCCCTTTGCATTCAGTACGAGAAGGAACTTCGACCAACAATGTCTGAAATAATGGAGTCCCTGATGGCTCTGTTACAAGATACCCACACACAGAGAGGCAATTCAGCCGATGGTACTGAAGAAGTTGACCATTTTGACACGTCTTTCCGCTCAACCAACTCCCGCTTCTTTGCGTCGCCTTCATTGAGCCATGTCTCCATTGGATCTTTGTTGTAA

Network for GWHGAAZE007048

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	142	180	4.70E-08
PF13516.7	LRR_6	206	221	0.23
PF13855.7	LRR_8	229	288	9.00E-10
PF00069.26	Pkinase	470	770	2.10E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.801
	SRR3591706	second leaf	3.788
	SRR3591707	mature leaf	3.334
	SRR3591708	Shoot apex	4.467
	SRR3591709	Stem	1.966
	SRR3591710	White floral bud	3.071
	SRR3591711	White flower	2.177
	SRR3591712	Green floral bud	2.150
	SRR3591713	Yellow flower	0.989
SRP173429	SRR8316895	Juvenile bud stage	1.693
	SRR8316896	Juvenile bud stage	2.198
	SRR8316897	Juvenile bud stage	0.993
	SRR8316894	Third green stage	0.984
	SRR8316900	Third green stage	2.201
	SRR8316901	Third green stage	1.862
	SRR8316898	Complete white stage	0.491
	SRR8316899	Complete white stage	2.087
	SRR8316903	Complete white stage	0.586
	SRR8316902	Silver flowering stage	0.527
	SRR8316904	Silver flowering stage	0.449
	SRR8316905	Silver flowering stage	0.203
	SRR8316906	Gold flowering stage	0.921
	SRR8316907	Gold flowering stage	0.701
	SRR8316908	Gold flowering stage	1.022
SRP132670	SRR6706286	Control	1.565
	SRR6706287	Light intensity 50%	1.755
	SRR6706288	Light intensity 20%	1.796
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.996
	CNS0095593	Slightly white alabastrum(diploid) 2	1.069
	CNS0095594	Slightly white alabastrum(diploid) 3	1.377
	CNS0095595	Whole white alabastrum(diploid) 2	1.451
	CNS0095596	Whole white alabastrum(diploid) 3	1.530
	CNS0095597	Whole white alabastrum(diploid) 4	0.725
	CNS0095598	Silvery flower (diploied) 1	1.018
	CNS0095599	Silvery flower (diploied) 2	1.022
	CNS0095600	Silvery flower (diploied) 3	1.296
	CNS0095601	Golden flower (diploid) 1	0.925
	CNS0095602	Golden flower (diploid) 2	0.857
	CNS0095603	Golden flower (diploid) 3	0.812
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.701
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.482
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.955
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.361
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.027
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.605
	CNS0095610	Silvery flower (tetraploid) 1	0.358
	CNS0095611	Silvery flower (tetraploid) 2	0.376
	CNS0095612	Silvery flower (tetraploid) 3	0.523
	CNS0095613	Golden flower (tetraploid) 1	0.078
	CNS0095614	Golden flower (tetraploid) 2	0.260
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	2.242
	CRR073298	Stem 2	1.969
	CRR073299	Stem 3	1.490
	CRR073300	Leaf 1	1.370
	CRR073301	Leaf 2	1.736
	CRR073302	Leaf 3	0.474
	CRR073303	Juvenile bud 1	1.480
	CRR073304	Juvenile bud 2	0.874
	CRR073305	Juvenile bud 3	1.518
	CRR073306	Third green 1	0.391
	CRR073307	Third green 2	0.416
	CRR073308	Third green 3	0.173
	CRR073309	Second white 1	0.186
	CRR073310	Second white 2	0.189
	CRR073311	Second white 3	0.371
	CRR073312	Silver flowering 1	0.156
	CRR073313	Silver flowering 2	0.231
	CRR073314	Silver flowering 3	0.701
	CRR073315	Gold flowering 1	1.035
	CRR073316	Gold flowering 2	1.363
	CRR073317	Gold flowering 3	1.127
	CRR073318	Tawny withering 1	1.888
	CRR073319	Tawny withering 2	2.461
	CRR073320	Tawny withering 3	1.018