Gene detail

Detail information of GWHGAAZE007033

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI30017.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|O48520\|DPOD2_ARATH	DNA polymerase delta small subunit
trEMBL	tr\|F6HLJ1\|F6HLJ1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55247.1}
TAIR10	AT2G42120.2	DNA polymerase delta small subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36622629	36643027	-
GWHAAZE00000002	mRNA	36622629	36643027	-
GWHAAZE00000002	exon	36622629	36623141	-
GWHAAZE00000002	exon	36624340	36624576	-
GWHAAZE00000002	exon	36626341	36626708	-
GWHAAZE00000002	exon	36627906	36628038	-
GWHAAZE00000002	exon	36628558	36628656	-
GWHAAZE00000002	exon	36635251	36635318	-
GWHAAZE00000002	exon	36635421	36635522	-
GWHAAZE00000002	exon	36636118	36636245	-
GWHAAZE00000002	exon	36636327	36636418	-
GWHAAZE00000002	exon	36637119	36637190	-
GWHAAZE00000002	exon	36637267	36637335	-
GWHAAZE00000002	exon	36638584	36638667	-
GWHAAZE00000002	exon	36638751	36638863	-
GWHAAZE00000002	exon	36639498	36639605	-
GWHAAZE00000002	exon	36640420	36640546	-
GWHAAZE00000002	exon	36640842	36640948	-
GWHAAZE00000002	exon	36642689	36642818	-
GWHAAZE00000002	exon	36642974	36643027	-
GWHAAZE00000002	CDS	36642974	36643027	-
GWHAAZE00000002	CDS	36642689	36642818	-
GWHAAZE00000002	CDS	36640842	36640948	-
GWHAAZE00000002	CDS	36640420	36640546	-
GWHAAZE00000002	CDS	36639498	36639605	-
GWHAAZE00000002	CDS	36638751	36638863	-
GWHAAZE00000002	CDS	36638584	36638667	-
GWHAAZE00000002	CDS	36637267	36637335	-
GWHAAZE00000002	CDS	36637119	36637190	-
GWHAAZE00000002	CDS	36636327	36636418	-
GWHAAZE00000002	CDS	36636118	36636245	-
GWHAAZE00000002	CDS	36635421	36635522	-
GWHAAZE00000002	CDS	36635251	36635318	-
GWHAAZE00000002	CDS	36628558	36628656	-
GWHAAZE00000002	CDS	36627906	36628038	-
GWHAAZE00000002	CDS	36626341	36626708	-
GWHAAZE00000002	CDS	36624340	36624576	-
GWHAAZE00000002	CDS	36622881	36623141	-
GWHAAZE00000002	three_prime_UTR	36622629	36622880	-

Transcript Sequence
>GWHTAAZE007041 ATGGAAGTCGACAAAGCGAACCTCCAAAGAAAACAATCCCTCTATCACTCCATGGACGAGGGATTTGAGATCCGGAAGGAGATGTACAGGGGGCAACAGTACAGTCAGATATACTTTGCAAGGCTTCACTTGATGAGAACTCTCATTTACTCTCTTCTTCCTAATTGGAAACCCCACTTGCCTGTCTGTACTGTTTTGGGACTTGAAGAAGGCAAGGAATGCGCTATTGTTGGAACCCTCTACAAGCATATGAAGCTCAAACCTTGCATTCTTGATGAATATTCTAAGGAGAGATCTGCAGGCCCGATAGTACAACCTCATAATTTTGTGCATTCAGATGACCTCTTGGTTCTTGAAGACGAAAGTGGAAGAGTTAAACTACGCAGCGATGTGCTTTTACCTTCTATATATGTGACAGGGAATGTGGTTGCCTTGCATGGAAAAGAAACTAGTGCTGGTGATTTTTTGGTTGAAGATATCCTAGAACCTGGCTTACCACCGCAGTTGGAATTGCCACATGATTCAGGTGAAGACAAGTACGTTGTTTTTGTATCTGGGTTGAACGTTGGCAACTCTTCTAATCCGCTGCAGTTTCAGCTTCTTGTTGACCACATAACTGGACATCTAGGAGATGAGATGGAACAAAGTATTGCAGCTCAAATAGTCCATGTAGTGATTGCTGGGAATTCTGTCGACCTTCCTTGTGGACTTCTTAACGGTCAGAATTTGGCTTCAAAGGATCAATCAAGATTGTTTGAGCCGATTAAAGAGATGGATATCATGTTAACTCAGATTGCTGCAAGTTTGCCTTTAGATATAATGCCGGGACCCAATGACCCGTCAAATTTTGCATTGCCACAGCAGCCTTTGCATAGATGCCTTTTTCCTGGATCAGCGTCTTATAACACATTTAGGACCTGCACTAATCCTCATTTCTTTCAGCTTGACAATGTCGGATTTCTTGGAACTTCAGGTCAGAATGTTGACGATCTCGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTTATGGAAAGGACATTGAGGTGGAGGCATCTAGCACCAACGGCACCAAATACCCTTGGGTGCTATCCTTTCACTGATAGGGATCCTTTCCTCATTGAGAAGTGTCCTCACGTCTACTTTGTTGGTAATCAGCATAAATACGAGACTCGCTTAATGAAAGGACCGGAGGGGCAGGTGGTAAGACTCATTTGCATCCCAAGATTCAGCGAGACGGGTGTTGCTGTTGTGATTCTTGTTTATCATCGCATCGTTTGTTTACAATTGGATTGGATTGCAGGTTTATTGATTCTTGTTGCCGCTTGTTTGGTTTCTGCACCCCAAATGTTGGCCAATGAGGTTATTGAGGATCACGGCCAGGTTGAGTCTGGCCATGGTGGCACTTTCGTTGGGGTTTACGATGGGCACGGTGGCCCTGAAGCCTCCAGATTCATCTGTGACCACCTCTTTCTTCATCTAATCAGATTTGCTCGCGAAAATGGAACCATATCTGAAGAAATTCTCAAGAGTGCTTTTTCTGCCACCGAAGAAGGATTTCTTTCTTTGGTAAGAAGAGCATGTGGAATAAAACCATTAATTGCGGCAATCGGGTCCTGTTGTCTTGTTGGAGTTATATGGAAAGGGACGTTATATGTTGCTAATTTGGGTGATTCTAGAGCTGTACTAGGTTCTTTAGGTAAATCAAATAATAAAATTGTTGCAGAGCAATTGACTGGGGATCATAATGCAAGTGTGGAGGAGGTTAGACAAGAACTCAAGTCATTGCATCCAGATGATTCACATATTGTAGTTATGAAGCATGGGGCTTGGCGTATCAAAGGCATCATTCAGGTATCTAGATCTATTGGTGATGCATATTTGAAGAGGCCAGAGTTCTCCCTCGATCCATCATTTCCACGGTTCCACCTCTCCGAACCTATCCGTAGGCCAGTGCTAAGAGCTGATCCGTCTATATACACAAGACCCTTACAATCTGATGACAAATTTATTATATTTGCATCCGATGGACTATGGGAACACATCACTAATCAAGAGGCTGTTGAGATTGTCCACAATAATCCCCGAGCAGGTGTTGCAAGAAGACTTCTTACATCAGCTCTATCTGAAGCTGCTAGGAAGAGAGAGATGAGGTATGATGATCTGAAAAAGGTTGAAAAGGGGACCCGGCGGTTCTTTCACGACGATATAACAGTTGTTGTCGTCTTTATAGACCATGATTTGCTGGAGAAAGAGGGACCTGTTGCTGAGCTTTCAGTACGAGGGTTCATTGACTCTGTGGGACCCTCTAAGTTCAGCATTTTACAAGGGCTCGAAAATCTAGCCACTTGAATCAGTCACACTGCTCATAAATGACAGGTTTAGCAAGTTTCATTTTCTAATAATGTTTTTTTTTTTGGGCAACATTTAACATTTTTTTGCTGGGTCTCTTTTGATTTTTCTGGGAGTTTCTTATATTGATTTGAACGTTGTTTCTTTGCTGCATTCTATGGTTATGATCTTTCCAAGAAAACTTGTGGATTTTTCTTTTAGTTTTTAATTTTGGTTTAAATATCAGCATTCTCTCCCCCGCCCCCAACAATC

Network for GWHGAAZE007033

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18018.2	DNA_pol_D_N	33	160	5.60E-35
PF04042.17	DNA_pol_E_B	181	388	1.10E-49
PF00481.22	PP2C	469	712	2.90E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02328	POLD2	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0003677	molecular_function	DNA binding
GO:0003887	molecular_function	DNA-directed DNA polymerase activity
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.000
	SRR3591706	second leaf	14.696
	SRR3591707	mature leaf	13.606
	SRR3591708	Shoot apex	15.305
	SRR3591709	Stem	12.513
	SRR3591710	White floral bud	11.482
	SRR3591711	White flower	16.440
	SRR3591712	Green floral bud	17.032
	SRR3591713	Yellow flower	14.360
SRP173429	SRR8316895	Juvenile bud stage	11.463
	SRR8316896	Juvenile bud stage	21.173
	SRR8316897	Juvenile bud stage	8.448
	SRR8316894	Third green stage	7.791
	SRR8316900	Third green stage	20.850
	SRR8316901	Third green stage	20.772
	SRR8316898	Complete white stage	11.625
	SRR8316899	Complete white stage	23.854
	SRR8316903	Complete white stage	14.561
	SRR8316902	Silver flowering stage	6.004
	SRR8316904	Silver flowering stage	10.067
	SRR8316905	Silver flowering stage	5.504
	SRR8316906	Gold flowering stage	12.579
	SRR8316907	Gold flowering stage	11.925
	SRR8316908	Gold flowering stage	10.807
SRP132670	SRR6706286	Control	10.382
	SRR6706287	Light intensity 50%	11.167
	SRR6706288	Light intensity 20%	11.280
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.448
	CNS0095593	Slightly white alabastrum(diploid) 2	10.677
	CNS0095594	Slightly white alabastrum(diploid) 3	13.990
	CNS0095595	Whole white alabastrum(diploid) 2	8.154
	CNS0095596	Whole white alabastrum(diploid) 3	10.537
	CNS0095597	Whole white alabastrum(diploid) 4	8.115
	CNS0095598	Silvery flower (diploied) 1	12.260
	CNS0095599	Silvery flower (diploied) 2	12.312
	CNS0095600	Silvery flower (diploied) 3	19.512
	CNS0095601	Golden flower (diploid) 1	12.838
	CNS0095602	Golden flower (diploid) 2	12.205
	CNS0095603	Golden flower (diploid) 3	11.295
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.945
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.977
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.485
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.217
	CNS0095610	Silvery flower (tetraploid) 1	10.605
	CNS0095611	Silvery flower (tetraploid) 2	12.817
	CNS0095612	Silvery flower (tetraploid) 3	7.759
	CNS0095613	Golden flower (tetraploid) 1	5.262
	CNS0095614	Golden flower (tetraploid) 2	7.227
	CNS0095615	Golden flower (tetraploid) 3	5.414
CRA001975	CRR073297	Stem 1	23.235
	CRR073298	Stem 2	18.875
	CRR073299	Stem 3	17.115
	CRR073300	Leaf 1	20.381
	CRR073301	Leaf 2	18.719
	CRR073302	Leaf 3	18.204
	CRR073303	Juvenile bud 1	17.714
	CRR073304	Juvenile bud 2	20.836
	CRR073305	Juvenile bud 3	19.286
	CRR073306	Third green 1	3.087
	CRR073307	Third green 2	4.211
	CRR073308	Third green 3	5.427
	CRR073309	Second white 1	4.714
	CRR073310	Second white 2	2.741
	CRR073311	Second white 3	3.242
	CRR073312	Silver flowering 1	2.769
	CRR073313	Silver flowering 2	2.252
	CRR073314	Silver flowering 3	1.741
	CRR073315	Gold flowering 1	11.728
	CRR073316	Gold flowering 2	15.850
	CRR073317	Gold flowering 3	10.461
	CRR073318	Tawny withering 1	12.746
	CRR073319	Tawny withering 2	12.398
	CRR073320	Tawny withering 3	12.362