Gene detail

Detail information of GWHGAAZE007031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009621812.1	9.9656E-150	PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 isoform X3 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FG33\|LRKS5_ARATH	5E-127	Probable L-type lectin-domain containing receptor kinase S.5 (Precursor)
trEMBL	tr\|K4D2U1\|K4D2U1_SOLLC	5E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g080510.1.1}
TAIR10	AT5G06740.1	6E-102	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36586432	36587358	+
GWHAAZE00000002	mRNA	36586432	36587358	+
GWHAAZE00000002	exon	36586432	36586627	+
GWHAAZE00000002	exon	36586667	36587358	+
GWHAAZE00000002	CDS	36586432	36586627	+
GWHAAZE00000002	CDS	36586667	36587358	+

Transcript Sequence
>GWHTAAZE007039 ATGTTAAGCAATACAAACGTCGCCGTGAAAAGATTCTCAAAGAATTCAAGTCAAGGGAAGCAAGAATTTGTAGCCGAGGTGACAATAATCGGTACCCTTCACCACAAAAACCTAGTTAAATTAGTGGGATGGTGCTATGAGAGCAACGAGTTTTTAGTGGTGTATGAGTTTATGCCAAATGGAAGCCTAGACAAGCGATCAATATTGAGTTGGGAAAGAAGGCACGGCGTTATTTACGGTGTGGCACAAGCACTGGATTATCTCCATAATGGGTGCGAAAAAAGGGTGCTTCACAGGGACATTAAAGCAAGCAATATAATGTTGGATCTGGAGTACAATGCAAAATTGGGAGATTTTGGCTTAGCTAGAACAATTCAAGTTACTGGGAAAACTCACCATTCAACGAAAGAGATTGCCGGAACGCCTGGCTATATGGCCCCCGAGAGTTTTCACACAGGCAGAGCGACAGTTGAAACGGACATATATGCGTTCGGTGTTCTCATACTCGAAGTTACCTGTGGAAGAAAACCGGGAAATCAAAACGGGCTTAATAATTATAACAATAGGATTATTGATTCGGTATGGGAACTTTACCGGATTGAAAGGTTGATGAATGCCATAGATATAAGGTTGAATGGGGAATTCGATGAAGAGCAAGTTGAGCGAGTGCTCAGGTTAGGATTGGCTTGTTGCAATCCGAACCCGTACCAAAGACCCAACATGAGAGTAGCTTTGCAGGTTCTTAATGGGGAGGTGGTTCCACCAGCTATACCTGACGAAAAACCTGCTTTTATGTGGCCGGTTATGGCTCCATTGGTTGTCGAGTGTTTGGATGAACCGCTCACAGAAGGCCAACAGACGCCAATAACAGTACTTAGTGGGAGATGA

Network for GWHGAAZE007031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	246	4.00E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.006
	SRR3591709	Stem	0.127
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.192
	SRR3591712	Green floral bud	0.346
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.171
	SRR8316897	Juvenile bud stage	0.121
	SRR8316894	Third green stage	0.093
	SRR8316900	Third green stage	0.121
	SRR8316901	Third green stage	0.067
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.304
	SRR8316902	Silver flowering stage	0.021
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.008
	SRR8316906	Gold flowering stage	0.233
	SRR8316907	Gold flowering stage	0.079
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.086
	SRR6706287	Light intensity 50%	0.161
	SRR6706288	Light intensity 20%	0.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.085
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.066
	CNS0095595	Whole white alabastrum(diploid) 2	0.184
	CNS0095596	Whole white alabastrum(diploid) 3	0.202
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.043
	CNS0095599	Silvery flower (diploied) 2	0.071
	CNS0095600	Silvery flower (diploied) 3	0.220
	CNS0095601	Golden flower (diploid) 1	0.015
	CNS0095602	Golden flower (diploid) 2	0.406
	CNS0095603	Golden flower (diploid) 3	0.340
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.069
	CNS0095610	Silvery flower (tetraploid) 1	0.026
	CNS0095611	Silvery flower (tetraploid) 2	0.131
	CNS0095612	Silvery flower (tetraploid) 3	0.103
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.246
CRA001975	CRR073297	Stem 1	0.249
	CRR073298	Stem 2	0.083
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.004
	CRR073301	Leaf 2	0.285
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.082
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.619
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000