Detail information of GWHGAAZE007030


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10157.16.7409E-107unnamed protein product [Coffea canephora]
Swissprottr|Q8GUK7|RMA3_ARATH2E-25E3 ubiquitin-protein ligase RMA3
trEMBLtr|A0A068UPD8|A0A068UPD8_COFCA3E-107Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313|EMBL:CDP10157.1}
TAIR10AT3G58030.41E-53RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3657170236572841-
GWHAAZE00000002mRNA3657170236572841-
GWHAAZE00000002exon3657170236572841-
GWHAAZE00000002CDS3657170236572841-
Transcript Sequence

Network for GWHGAAZE007030

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13923.7zf-C3HC4_250906.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.221
SRR3591706second leaf9.105
SRR3591707mature leaf7.552
SRR3591708Shoot apex18.696
SRR3591709Stem12.371
SRR3591710White floral bud19.468
SRR3591711White flower21.853
SRR3591712Green floral bud15.828
SRR3591713Yellow flower16.352
SRP173429 SRR8316895Juvenile bud stage 8.710
SRR8316896Juvenile bud stage 9.930
SRR8316897Juvenile bud stage 4.193
SRR8316894Third green stage 4.451
SRR8316900Third green stage 11.961
SRR8316901Third green stage 12.393
SRR8316898Complete white stage 4.588
SRR8316899Complete white stage 20.550
SRR8316903Complete white stage 10.833
SRR8316902Silver flowering stage7.065
SRR8316904Silver flowering stage5.706
SRR8316905Silver flowering stage3.537
SRR8316906Gold flowering stage 10.163
SRR8316907Gold flowering stage 12.915
SRR8316908Gold flowering stage 9.492
SRP132670SRR6706286Control18.504
SRR6706287Light intensity 50%17.560
SRR6706288Light intensity 20%17.701
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.918
CNS0095593Slightly white alabastrum(diploid) 212.651
CNS0095594Slightly white alabastrum(diploid) 311.763
CNS0095595Whole white alabastrum(diploid) 210.237
CNS0095596Whole white alabastrum(diploid) 39.515
CNS0095597Whole white alabastrum(diploid) 48.190
CNS0095598Silvery flower (diploied) 117.758
CNS0095599Silvery flower (diploied) 213.003
CNS0095600Silvery flower (diploied) 316.037
CNS0095601Golden flower (diploid) 117.581
CNS0095602Golden flower (diploid) 219.869
CNS0095603Golden flower (diploid) 316.289
CNS0095604Slightly white alabastrum(tetraploid) 114.298
CNS0095605Slightly white alabastrum(tetraploid) 212.516
CNS0095606Slightly white alabastrum(tetraploid) 321.338
CNS0095607Whole white alabastrum(tetraploid) 17.372
CNS0095608Whole white alabastrum(tetraploid) 25.553
CNS0095609Whole white alabastrum(tetraploid) 311.675
CNS0095610Silvery flower (tetraploid) 113.748
CNS0095611Silvery flower (tetraploid) 213.639
CNS0095612Silvery flower (tetraploid) 38.713
CNS0095613Golden flower (tetraploid) 110.823
CNS0095614Golden flower (tetraploid) 212.605
CNS0095615Golden flower (tetraploid) 312.058
CRA001975CRR073297Stem 121.601
CRR073298Stem 219.830
CRR073299Stem 321.647
CRR073300Leaf 119.534
CRR073301Leaf 221.905
CRR073302Leaf 320.845
CRR073303Juvenile bud 121.810
CRR073304Juvenile bud 214.886
CRR073305Juvenile bud 326.661
CRR073306Third green 18.504
CRR073307Third green 29.156
CRR073308Third green 37.883
CRR073309Second white 110.386
CRR073310Second white 27.432
CRR073311Second white 39.645
CRR073312Silver flowering 19.936
CRR073313Silver flowering 215.982
CRR073314Silver flowering 39.619
CRR073315Gold flowering 110.432
CRR073316Gold flowering 210.928
CRR073317Gold flowering 310.448
CRR073318Tawny withering 117.184
CRR073319Tawny withering 224.049
CRR073320Tawny withering 317.117