Detail information of GWHGAAZE007025


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10166.10unnamed protein product [Coffea canephora]
Swissprottr|Q9M2P4|SINA2_ARATH0E3 ubiquitin-protein ligase SINAT2
trEMBLtr|A0A068UP17|A0A068UP17_COFCA0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}
TAIR10AT3G58040.13E-144seven in absentia of Arabidopsis 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3650184936505556-
GWHAAZE00000002mRNA3650184936505556-
GWHAAZE00000002exon3650184936502166-
GWHAAZE00000002exon3650334536503731-
GWHAAZE00000002exon3650442636504470-
GWHAAZE00000002exon3650535036505556-
GWHAAZE00000002CDS3650535036505556-
GWHAAZE00000002CDS3650442636504470-
GWHAAZE00000002CDS3650334536503731-
GWHAAZE00000002CDS3650184936502166-
Transcript Sequence

Network for GWHGAAZE007025

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03145.17Sina1133123.60E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04506SIAH1 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0007275biological_processmulticellular organism development
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.604
SRR3591706second leaf11.319
SRR3591707mature leaf8.943
SRR3591708Shoot apex21.425
SRR3591709Stem17.709
SRR3591710White floral bud12.875
SRR3591711White flower12.158
SRR3591712Green floral bud20.323
SRR3591713Yellow flower10.852
SRP173429 SRR8316895Juvenile bud stage 12.496
SRR8316896Juvenile bud stage 22.247
SRR8316897Juvenile bud stage 9.645
SRR8316894Third green stage 7.358
SRR8316900Third green stage 22.661
SRR8316901Third green stage 21.689
SRR8316898Complete white stage 5.487
SRR8316899Complete white stage 31.802
SRR8316903Complete white stage 10.970
SRR8316902Silver flowering stage4.721
SRR8316904Silver flowering stage5.139
SRR8316905Silver flowering stage2.795
SRR8316906Gold flowering stage 16.423
SRR8316907Gold flowering stage 10.783
SRR8316908Gold flowering stage 17.712
SRP132670SRR6706286Control21.021
SRR6706287Light intensity 50%21.587
SRR6706288Light intensity 20%23.316
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.691
CNS0095593Slightly white alabastrum(diploid) 215.270
CNS0095594Slightly white alabastrum(diploid) 313.367
CNS0095595Whole white alabastrum(diploid) 215.236
CNS0095596Whole white alabastrum(diploid) 313.951
CNS0095597Whole white alabastrum(diploid) 412.008
CNS0095598Silvery flower (diploied) 119.664
CNS0095599Silvery flower (diploied) 213.439
CNS0095600Silvery flower (diploied) 316.341
CNS0095601Golden flower (diploid) 117.305
CNS0095602Golden flower (diploid) 218.567
CNS0095603Golden flower (diploid) 320.346
CNS0095604Slightly white alabastrum(tetraploid) 117.097
CNS0095605Slightly white alabastrum(tetraploid) 214.328
CNS0095606Slightly white alabastrum(tetraploid) 321.811
CNS0095607Whole white alabastrum(tetraploid) 112.003
CNS0095608Whole white alabastrum(tetraploid) 29.850
CNS0095609Whole white alabastrum(tetraploid) 314.129
CNS0095610Silvery flower (tetraploid) 18.373
CNS0095611Silvery flower (tetraploid) 211.223
CNS0095612Silvery flower (tetraploid) 37.584
CNS0095613Golden flower (tetraploid) 14.814
CNS0095614Golden flower (tetraploid) 29.650
CNS0095615Golden flower (tetraploid) 38.698
CRA001975CRR073297Stem 123.172
CRR073298Stem 223.947
CRR073299Stem 322.306
CRR073300Leaf 123.400
CRR073301Leaf 225.504
CRR073302Leaf 326.444
CRR073303Juvenile bud 118.749
CRR073304Juvenile bud 216.945
CRR073305Juvenile bud 321.329
CRR073306Third green 18.990
CRR073307Third green 28.480
CRR073308Third green 37.519
CRR073309Second white 16.273
CRR073310Second white 26.701
CRR073311Second white 36.900
CRR073312Silver flowering 116.398
CRR073313Silver flowering 212.120
CRR073314Silver flowering 37.008
CRR073315Gold flowering 112.726
CRR073316Gold flowering 218.870
CRR073317Gold flowering 315.791
CRR073318Tawny withering 142.937
CRR073319Tawny withering 245.053
CRR073320Tawny withering 333.323