Gene detail

Detail information of GWHGAAZE007023

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011078811.1	PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Sesamum indicum]
Swissprot	tr\|Q8W0Z9\|CCR4A_ARATH	Carbon catabolite repressor protein 4 homolog 1
trEMBL	tr\|B9SYV1\|B9SYV1_RICCO	Carbon catabolite repressor protein, putative {ECO:0000313\|EMBL:EEF31213.1}
TAIR10	AT3G58560.1	DNAse I-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36473097	36485205	+
GWHAAZE00000002	mRNA	36473097	36485205	+
GWHAAZE00000002	exon	36473097	36473254	+
GWHAAZE00000002	exon	36479933	36480662	+
GWHAAZE00000002	exon	36482510	36482596	+
GWHAAZE00000002	exon	36482678	36482761	+
GWHAAZE00000002	exon	36482836	36482916	+
GWHAAZE00000002	exon	36482996	36483121	+
GWHAAZE00000002	exon	36483604	36483657	+
GWHAAZE00000002	exon	36483752	36483843	+
GWHAAZE00000002	exon	36483954	36484068	+
GWHAAZE00000002	exon	36484479	36484626	+
GWHAAZE00000002	exon	36485060	36485205	+
GWHAAZE00000002	CDS	36473097	36473254	+
GWHAAZE00000002	CDS	36479933	36480662	+
GWHAAZE00000002	CDS	36482510	36482596	+
GWHAAZE00000002	CDS	36482678	36482761	+
GWHAAZE00000002	CDS	36482836	36482916	+
GWHAAZE00000002	CDS	36482996	36483121	+
GWHAAZE00000002	CDS	36483604	36483657	+
GWHAAZE00000002	CDS	36483752	36483843	+
GWHAAZE00000002	CDS	36483954	36484068	+
GWHAAZE00000002	CDS	36484479	36484626	+
GWHAAZE00000002	CDS	36485060	36485205	+

Transcript Sequence
>GWHTAAZE007031 ATGTTAAGTGTGGTTAGAGTGCATCTACCGTCCGATATTCCGATTGTGGGCTGTGAATTAACGCCGTACGTGCTCTTACGGAGACCTGATAAGACTTTTACTACTGAGGATGTGCCCGAATCTTCACCTCTACAAGGCCATTTCTTGAGATACAAGTGGTACCGCGTACAAAGTGATAAGAAAGTCGCTATCTGCAGCGTACACCCTTCAGAACAGGCCACATTGCAGTGCTTGGGATGTGTTAAAGCCAAACTACCCATTGCCAAAAGTTTCCATTGCTCGCCCAAATGTTTTTCCGACGCATGGCAGCACCATCGTGTTCTTCACGAGCGTGCGGCTAGCGCTGTAAACGAGAACGGAAACGAGGAGGAGGAGTTATTTGGGCGCTTCAATGCAAATTTGACCAGTTCTCAATCAAACCCTAGCCTCTCAAACGGCACGACACCTTTATATCCGGCAGCAGTTGCACAAAGGAGTGGTGGTGAAACATGGTTCGAAGTTGGACGGTCTAAAACCTACACACCAACCACTGACGATATTGGACATGTCCTTAAGTTTGAGTGTGTTGTTGTAGATGTAGAAATGAAACAAACTGTTGGACATGCCAGCACTATACTGACATCCCTTGTGATTCCAGCTCCGTCCCCTAGTCCGCGGTGTTTGATTTCAGTAAGCGGTGTTGATGTAACGGGGCATTTGGATTTGGATGGGCGTATTTTATCATCAGGAACTTTTACAGTGCTATCGTACAACATTTTGTCTGATGCATATGCTGCGAGTGAAATATACAGTTATTGCCCTTCTTGGGCTCTTTCTTGGGCTTACCGCAGACAGAATTTGCTACGGGAAATAGTCGGTTACCGTGCTGACATTGTTTGCCTTCAAGAGGTTCAAAGTGATCATTTTGAAGAGTTTTTTGCTCCTGAGCTGGACAAACATGGCTATCAGTCTCTATTCAAAAGAAAAACTGCAGAGGTTTTCAGTGGCAATATTCATACCATTGATGGTTGTGCTACATTTTTTCGCAGAGATAGATTTTCACATGTCAAAAAATACGAGGTTGAGTTTAATAAAGCTGCCCAGTCTTTGACTGATGCTTTGGTTCCAAGTGCTCAAAAGAAAACTGCTTTAACTCGATTGCTCTTCAGTTCCAGTGAAAAGTTGGATTATTTTTTTCAGGATAATGTTGCACTCATAGTGGTTCTAGAAGCAAAGTTCAGTAACCAGGGTGTTGATAATCCCGGGAAGCGTCAGCTTGTTTGTGTTGCAAATACACATGTAAACGTACACCAAGATTTAAAGGATGTCAAGCTTTGGCAGGTTCACACCCTCTTGAAAGGATTGGAAAAAATTGCCGCCAGTGCAGACATCCCAATGTTGGTGTGTGGAGATTTTAATTCAGTTCCCGGAAGTGCTTCTCATGCACTTCTTGCAATGGGAAAAGTAGATCCAATGCATCCAGAATTAGTAGTGGACCCTCTCGGAATTCTTCGCCCTTCCAGCAAACTAACTCATCAGCTGCCATTGGTGAGTGCGTACTCTTCGTTTGCAAGAGTTGGGGTTGGTCTCGGTTTTGAGCAACAGAGGAGGAGAATGGATCCTACTACAAATGAACCTCTATTTACAAACTGCACTAGAGATTTTATTGGTACTCTTGATTACATATTTTATTCAGCGGACTCTTTAACGGTGGAGTCATTGTTGGAGCTTTTGGATGAGGATAGCTTGAGAAAAGACACAGCTCTTCCTTCTCCAGAGTGGTCCTCTGATCACATAGCACTCTTAGCTGAATTTCGCTGCAAGCCCCGACTTAGAAGATAG

Network for GWHGAAZE007023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03372.24	Exo_endo_phos	248	591	4.50E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12603	CNOT6, CCR4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.797
	SRR3591706	second leaf	31.854
	SRR3591707	mature leaf	58.191
	SRR3591708	Shoot apex	36.113
	SRR3591709	Stem	36.039
	SRR3591710	White floral bud	32.618
	SRR3591711	White flower	32.346
	SRR3591712	Green floral bud	37.346
	SRR3591713	Yellow flower	23.564
SRP173429	SRR8316895	Juvenile bud stage	21.811
	SRR8316896	Juvenile bud stage	23.838
	SRR8316897	Juvenile bud stage	15.576
	SRR8316894	Third green stage	12.693
	SRR8316900	Third green stage	32.950
	SRR8316901	Third green stage	29.845
	SRR8316898	Complete white stage	12.424
	SRR8316899	Complete white stage	52.249
	SRR8316903	Complete white stage	20.911
	SRR8316902	Silver flowering stage	9.900
	SRR8316904	Silver flowering stage	15.095
	SRR8316905	Silver flowering stage	6.970
	SRR8316906	Gold flowering stage	20.359
	SRR8316907	Gold flowering stage	20.068
	SRR8316908	Gold flowering stage	22.434
SRP132670	SRR6706286	Control	28.397
	SRR6706287	Light intensity 50%	30.182
	SRR6706288	Light intensity 20%	29.440
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.144
	CNS0095593	Slightly white alabastrum(diploid) 2	24.480
	CNS0095594	Slightly white alabastrum(diploid) 3	18.283
	CNS0095595	Whole white alabastrum(diploid) 2	25.825
	CNS0095596	Whole white alabastrum(diploid) 3	17.473
	CNS0095597	Whole white alabastrum(diploid) 4	20.444
	CNS0095598	Silvery flower (diploied) 1	32.156
	CNS0095599	Silvery flower (diploied) 2	23.218
	CNS0095600	Silvery flower (diploied) 3	35.247
	CNS0095601	Golden flower (diploid) 1	28.297
	CNS0095602	Golden flower (diploid) 2	40.636
	CNS0095603	Golden flower (diploid) 3	37.893
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.211
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.258
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.650
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.542
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.795
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.284
	CNS0095610	Silvery flower (tetraploid) 1	38.741
	CNS0095611	Silvery flower (tetraploid) 2	40.647
	CNS0095612	Silvery flower (tetraploid) 3	24.028
	CNS0095613	Golden flower (tetraploid) 1	16.265
	CNS0095614	Golden flower (tetraploid) 2	33.841
	CNS0095615	Golden flower (tetraploid) 3	22.627
CRA001975	CRR073297	Stem 1	32.067
	CRR073298	Stem 2	28.339
	CRR073299	Stem 3	29.071
	CRR073300	Leaf 1	34.439
	CRR073301	Leaf 2	29.287
	CRR073302	Leaf 3	29.450
	CRR073303	Juvenile bud 1	28.180
	CRR073304	Juvenile bud 2	18.556
	CRR073305	Juvenile bud 3	32.262
	CRR073306	Third green 1	6.552
	CRR073307	Third green 2	6.082
	CRR073308	Third green 3	8.256
	CRR073309	Second white 1	7.815
	CRR073310	Second white 2	8.694
	CRR073311	Second white 3	6.251
	CRR073312	Silver flowering 1	6.176
	CRR073313	Silver flowering 2	5.355
	CRR073314	Silver flowering 3	4.179
	CRR073315	Gold flowering 1	31.473
	CRR073316	Gold flowering 2	53.979
	CRR073317	Gold flowering 3	44.013
	CRR073318	Tawny withering 1	29.149
	CRR073319	Tawny withering 2	24.442
	CRR073320	Tawny withering 3	27.577