Gene detail

Detail information of GWHGAAZE007017

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011075074.1	PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Sesamum indicum]
Swissprot	tr\|Q84W89\|RH37_ARATH	DEAD-box ATP-dependent RNA helicase 37
trEMBL	tr\|F6HLF4\|F6HLF4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55215.1}
TAIR10	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36265923	36271104	+
GWHAAZE00000002	mRNA	36265923	36271104	+
GWHAAZE00000002	exon	36265923	36266660	+
GWHAAZE00000002	exon	36267061	36267144	+
GWHAAZE00000002	exon	36268625	36268867	+
GWHAAZE00000002	exon	36269781	36269948	+
GWHAAZE00000002	exon	36270402	36270515	+
GWHAAZE00000002	exon	36270607	36271104	+
GWHAAZE00000002	CDS	36265923	36266660	+
GWHAAZE00000002	CDS	36267061	36267144	+
GWHAAZE00000002	CDS	36268625	36268867	+
GWHAAZE00000002	CDS	36269781	36269948	+
GWHAAZE00000002	CDS	36270402	36270515	+
GWHAAZE00000002	CDS	36270607	36271104	+

Transcript Sequence
>GWHTAAZE007025 ATGAGAACTTCTTGGGCAGATTCTGTTGAGAATGCAGCTTCTGGTTCTTCCGATAATAATGTGACTGGTAGGGCTTCGAAGCCTGCTTACGTTCCACCGCATCTTCGTAATAGGCCATCTGCGTCAGAGCCCCCGGCTAGTGGTCCACCAGCTGGTAATGATAGGGTTGGATATAGTGGGCCCGCAAGTGGGTCACGGTGGGGTGCTGCTAGACCTGATTACGGCCGCCAGGGATATACTACCGGTGGCCGTGGTGGAGGTGGCGGCGGCGGTGGATGGGGAAATAGAGGGGGTGGCTGGGGTGGGAGAGAAAGGGAGGTTAACCCATTTGCTAATGATGATGCTGACATTGATGTGGAGAGTTCATTTAGCGAGCAAGAAAGTAGTGGTATTAATTTTGATGCCTACGAAGATATTCCAGTGGAGACGAGCGGGGTTGATGTGCCACCTCCGGTGAATACATTTGCGGAGATTGACTTGGGGGAGGCTCTAAATCTAAATATTAGGAGGTGCAAATATGTGAAACCGACCCCTGTTCAGCGTTATACGATACCCATTTCCCTTGCTGGACGAGATTTGATGGCTTGTGCACAGACTGGCTCGGGCAAGACAGCTGCATTTTGCTTCCCAATAATTAGCGGAATTATGACGGGCCAATTTGCACAGAGACCGCGAGGGATACGGACAGTGTTTCCTCTTGCTCTCATTCTTTCTCCAACGAGGGAGCTCTCTTGTCAGATACATGAGGAAGCTAGAAAGTTTTCTTATCAAACGGGTGTCAAGGTGGTGGTTGTTTATGGTGGAGCACCCATCAATCAACAGTTACGAGAACTTGAAAGAGGAGTTGATATTCTTGTGGCAACCCCAGGAAGGTTAGTCGATTTGCTCGAGAGGGCAAAAGTGTCATTGCAGATGATTAGGTATTTGGCTCTTGATGAGGCGGATCGAATGCTGGATATGGGGTTTGAACCTCAGATCAGAAAGATAGTGGAACAAATGGACATGCCTCCGCAAGGCGAAAGACAGACTATGCTATTTAGTGCTACTTTTCCAAAAGAAATCCAGAGATTGGCATCTGATTTTCTTTGGAATTACATATTTTTGACGGTTGGACGGGTTGGTTCAAGTACGGATTTGATTGTTCAAAGGGTTGAATTTGTTCAAGAGAGTGACAAGAGAAGCCACCTTATGGACCTTCTTCATGCACAGAAGGAGAATGGAGTACATGGCAAGCAAGCTTTAACTTTAGTATTCGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTACATTAATGGGTTTCCGGCGACTACCATTCACGGAGATAGAACACAACAGGAAAGAGAACAAGCATTGAGATCATTCAAGAGCGGAAACACACCAATCTTAGTTGCAACCGATGTGGCGGCCCGAGGCCTCGATATTCCACACGTATCCCACGTGGTCAATTTCGACCTACCCAATGATATAGATGATTACGTCCATCGGATCGGTCGAACGGGTCGGGCTGGAAAAACTGGACTGGCAACGGCCTTCTTTAACGAAAACAACATGTCTCTGGCTAAACCCCTGTCCGATCTCATGCAAGAGGCCAACCAAGAAGTACCTGCTTGGCTCACTAGATACGCGAGCCGCGCCCCCTATGGTGGTGGTAAAAGCCGGCGGTCTGGTGGTGGACGGTTCGGTGGCCGTGACTTTAGAAAGGAGCCGTCTTTTAATCGTGGTGGTGGTGGTGGTGGCGGTTTCACTGCATTTTATGGAGGTAATAGTGGCGGTGGATATGGTGGTTACAGCGGTGGATATGGTGGTCCTGGGGTAGCCAGTGCTTGGGATTAG

Network for GWHGAAZE007017

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	177	357	7.90E-50
PF00271.32	Helicase_C	392	507	1.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11594	DDX3X, bel	RIG-I-like receptor signaling pathway	map04622

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.390
	SRR3591706	second leaf	17.450
	SRR3591707	mature leaf	17.510
	SRR3591708	Shoot apex	24.059
	SRR3591709	Stem	18.317
	SRR3591710	White floral bud	38.075
	SRR3591711	White flower	28.207
	SRR3591712	Green floral bud	34.998
	SRR3591713	Yellow flower	15.021
SRP173429	SRR8316895	Juvenile bud stage	15.242
	SRR8316896	Juvenile bud stage	17.892
	SRR8316897	Juvenile bud stage	5.272
	SRR8316894	Third green stage	9.749
	SRR8316900	Third green stage	26.793
	SRR8316901	Third green stage	25.652
	SRR8316898	Complete white stage	8.686
	SRR8316899	Complete white stage	34.772
	SRR8316903	Complete white stage	14.849
	SRR8316902	Silver flowering stage	9.206
	SRR8316904	Silver flowering stage	9.615
	SRR8316905	Silver flowering stage	5.488
	SRR8316906	Gold flowering stage	15.728
	SRR8316907	Gold flowering stage	13.332
	SRR8316908	Gold flowering stage	13.340
SRP132670	SRR6706286	Control	26.395
	SRR6706287	Light intensity 50%	28.460
	SRR6706288	Light intensity 20%	31.694
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.813
	CNS0095593	Slightly white alabastrum(diploid) 2	18.302
	CNS0095594	Slightly white alabastrum(diploid) 3	12.583
	CNS0095595	Whole white alabastrum(diploid) 2	13.195
	CNS0095596	Whole white alabastrum(diploid) 3	12.785
	CNS0095597	Whole white alabastrum(diploid) 4	13.849
	CNS0095598	Silvery flower (diploied) 1	21.069
	CNS0095599	Silvery flower (diploied) 2	16.459
	CNS0095600	Silvery flower (diploied) 3	21.449
	CNS0095601	Golden flower (diploid) 1	13.374
	CNS0095602	Golden flower (diploid) 2	18.648
	CNS0095603	Golden flower (diploid) 3	18.309
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.307
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.602
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.295
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.158
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.515
	CNS0095610	Silvery flower (tetraploid) 1	22.862
	CNS0095611	Silvery flower (tetraploid) 2	23.713
	CNS0095612	Silvery flower (tetraploid) 3	23.325
	CNS0095613	Golden flower (tetraploid) 1	11.393
	CNS0095614	Golden flower (tetraploid) 2	18.536
	CNS0095615	Golden flower (tetraploid) 3	13.065
CRA001975	CRR073297	Stem 1	19.981
	CRR073298	Stem 2	20.130
	CRR073299	Stem 3	20.543
	CRR073300	Leaf 1	21.472
	CRR073301	Leaf 2	23.274
	CRR073302	Leaf 3	14.805
	CRR073303	Juvenile bud 1	21.631
	CRR073304	Juvenile bud 2	19.997
	CRR073305	Juvenile bud 3	26.311
	CRR073306	Third green 1	13.699
	CRR073307	Third green 2	12.389
	CRR073308	Third green 3	14.974
	CRR073309	Second white 1	12.704
	CRR073310	Second white 2	11.051
	CRR073311	Second white 3	9.710
	CRR073312	Silver flowering 1	15.056
	CRR073313	Silver flowering 2	15.334
	CRR073314	Silver flowering 3	11.737
	CRR073315	Gold flowering 1	14.563
	CRR073316	Gold flowering 2	14.618
	CRR073317	Gold flowering 3	15.016
	CRR073318	Tawny withering 1	19.327
	CRR073319	Tawny withering 2	21.441
	CRR073320	Tawny withering 3	21.920