Gene detail

Detail information of GWHGAAZE006998

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008236892.1	PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Prunus mume]
Swissprot	tr\|Q9T034\|SYFA_ARATH	Probable phenylalanine--tRNA ligase alpha subunit
trEMBL	tr\|K4CXN6\|K4CXN6_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g007060.2.1}
TAIR10	AT4G39280.1	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35885452	35892555	+
GWHAAZE00000002	mRNA	35885452	35892555	+
GWHAAZE00000002	exon	35885452	35885598	+
GWHAAZE00000002	exon	35886014	35886136	+
GWHAAZE00000002	exon	35886547	35886639	+
GWHAAZE00000002	exon	35887564	35887620	+
GWHAAZE00000002	exon	35887887	35887942	+
GWHAAZE00000002	exon	35888266	35888358	+
GWHAAZE00000002	exon	35889079	35889223	+
GWHAAZE00000002	exon	35889592	35889629	+
GWHAAZE00000002	exon	35889766	35889804	+
GWHAAZE00000002	exon	35889925	35890001	+
GWHAAZE00000002	exon	35890086	35890170	+
GWHAAZE00000002	exon	35890362	35890458	+
GWHAAZE00000002	exon	35891122	35891218	+
GWHAAZE00000002	exon	35891765	35891836	+
GWHAAZE00000002	exon	35892263	35892329	+
GWHAAZE00000002	exon	35892411	35892555	+
GWHAAZE00000002	CDS	35885452	35885598	+
GWHAAZE00000002	CDS	35886014	35886136	+
GWHAAZE00000002	CDS	35886547	35886639	+
GWHAAZE00000002	CDS	35887564	35887620	+
GWHAAZE00000002	CDS	35887887	35887942	+
GWHAAZE00000002	CDS	35888266	35888358	+
GWHAAZE00000002	CDS	35889079	35889223	+
GWHAAZE00000002	CDS	35889592	35889629	+
GWHAAZE00000002	CDS	35889766	35889804	+
GWHAAZE00000002	CDS	35889925	35890001	+
GWHAAZE00000002	CDS	35890086	35890170	+
GWHAAZE00000002	CDS	35890362	35890458	+
GWHAAZE00000002	CDS	35891122	35891218	+
GWHAAZE00000002	CDS	35891765	35891836	+
GWHAAZE00000002	CDS	35892263	35892329	+
GWHAAZE00000002	CDS	35892411	35892540	+
GWHAAZE00000002	three_prime_UTR	35892541	35892555	+

Transcript Sequence
>GWHTAAZE007006 ATGGCAGAAGAAGCCGTGTTAGGCTTCCTTGAGAAAAACGAAGAGATAACAGATTCGGGCCAGTTCGCAGCTGAGCGGGAAATTAATCACGATGAAATTGTCAACGTTATTAAAAGCCTCAATGGGTTCAGACTTGTTGATGCTAAGGACATTAAGAGGGAGAGATGGGTACTCACCGATGAGGCAAAGAAATATGCTGCTGAAGGCAGTCCAGAAGTTCAGTTCTTATTGGCTGTTCCTCCAGAGGGCATCTCGATAAACGAGTTGAAGGGAAAGTTGGGCAACTCAGTTTTTGCGATAGGTCGAGCACAGGCCTCAAAAAATAAATGGGTGGAGATTGGAAACGACAAAGTGACCAAGAAGGTTCAATATGTTGATGACAAGGTTAAAGATGTGCTTATGAGGATACAAAACGGGGAGGTCATCAGCCCAGAGGATATTGCTGCTCTCAAACGCAGAAAGCTTATTTCTCCGCAAATATGGAAAGGTTACTCAGTGACAAAAGGTCCCAAATACACTCCAAAAAGAAAAAAGGCCGCTACTGATTTAACAAGGGAGAATTTGCAAAGGGGTGATTGGAAGGAGTTGGAGTTTAAAGAATATAATTTCAGTGCAAAAGGTTTCCCTGGTGAAGGTGGCCATCTCCATCCATTGCTCAAGGCAAGTACATATGATTCTTCTTTCCTTCACATCTTTTCACTTTTCCTCTGTTTGGTACGAAGGCAAATGCAGATGATTTTTCTTCAGATGGGATTTGAGGAGATGCCAACGAATAATTATGTTGAAAGCAGCTTCTGGAATTTCGATGCTCTTTTCCAGCCACAGCAACACCCTGCTCGTGATTCACACGATACATTCTTCTTAAAAGAACCTTCCACAACGAAGTGGCTGCCTGAAGATTATGTTGAGCGTGTAAAGCAAATTCACGAATCTGGTGGTTATGGGTCCCGAGGGTACGGATATGATTGGAAAAGAGAGGAAGCAAACAAAAACCTTCTGAGAACTCATACCACTGCTGTTTCCTCAAGGATGTTGTACTCCCTTGCGCAGAAACCTTTTGCGGCAAAAAAGTACTATTCTGTTGATCGCGTGTTCAGAAATGAAGCTGTAGATCGTACACATCTTGCAGAGTTTCATCAAATAGAAGGACTAATATGTGATCGAGGGCTTACCCTTGGCGATCTGCAGGGAGTTCTGTATGACTTCTTCTCCCGTCTGGGAATGTCTAAGTTGCGTTTCAAACCTGCCTACAATCCATACACTGAACCCAGCATGGAAATCTTTGGTTATCATGAAGGTTTTAAGAAATGGGTGGAAATTGGAAATTCTGGCATGTTTAGACCTGAAATGCTGCTCCCAATGGGACTTCCTGAAGATGTTCGGGTTATTGCCTGGGGTCTTTCCCTTGAAAGGTAACAAATAAATTTTTAC

Network for GWHGAAZE006998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18552.2	PheRS_DBD1	3	56	1.50E-08
PF18553.2	PheRS_DBD3	70	123	3.50E-12
PF01409.21	tRNA-synt_2d	239	471	1.10E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01889	FARSA, pheS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006432	biological_process	phenylalanyl-tRNA aminoacylation
GO:0043039	biological_process	tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004826	molecular_function	phenylalanine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000049	molecular_function	tRNA binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.912
	SRR3591706	second leaf	21.090
	SRR3591707	mature leaf	15.512
	SRR3591708	Shoot apex	37.347
	SRR3591709	Stem	22.875
	SRR3591710	White floral bud	30.893
	SRR3591711	White flower	38.374
	SRR3591712	Green floral bud	34.549
	SRR3591713	Yellow flower	36.274
SRP173429	SRR8316895	Juvenile bud stage	27.338
	SRR8316896	Juvenile bud stage	35.780
	SRR8316897	Juvenile bud stage	19.818
	SRR8316894	Third green stage	14.498
	SRR8316900	Third green stage	41.933
	SRR8316901	Third green stage	38.028
	SRR8316898	Complete white stage	12.780
	SRR8316899	Complete white stage	40.432
	SRR8316903	Complete white stage	20.225
	SRR8316902	Silver flowering stage	15.257
	SRR8316904	Silver flowering stage	21.323
	SRR8316905	Silver flowering stage	9.178
	SRR8316906	Gold flowering stage	34.441
	SRR8316907	Gold flowering stage	33.927
	SRR8316908	Gold flowering stage	46.457
SRP132670	SRR6706286	Control	38.833
	SRR6706287	Light intensity 50%	37.807
	SRR6706288	Light intensity 20%	39.981
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.651
	CNS0095593	Slightly white alabastrum(diploid) 2	23.350
	CNS0095594	Slightly white alabastrum(diploid) 3	18.839
	CNS0095595	Whole white alabastrum(diploid) 2	18.158
	CNS0095596	Whole white alabastrum(diploid) 3	19.662
	CNS0095597	Whole white alabastrum(diploid) 4	16.600
	CNS0095598	Silvery flower (diploied) 1	22.955
	CNS0095599	Silvery flower (diploied) 2	17.261
	CNS0095600	Silvery flower (diploied) 3	31.049
	CNS0095601	Golden flower (diploid) 1	19.294
	CNS0095602	Golden flower (diploid) 2	27.803
	CNS0095603	Golden flower (diploid) 3	27.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.422
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.640
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.818
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.005
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.698
	CNS0095610	Silvery flower (tetraploid) 1	37.402
	CNS0095611	Silvery flower (tetraploid) 2	31.226
	CNS0095612	Silvery flower (tetraploid) 3	28.229
	CNS0095613	Golden flower (tetraploid) 1	17.167
	CNS0095614	Golden flower (tetraploid) 2	26.560
	CNS0095615	Golden flower (tetraploid) 3	24.958
CRA001975	CRR073297	Stem 1	40.635
	CRR073298	Stem 2	37.925
	CRR073299	Stem 3	35.755
	CRR073300	Leaf 1	41.035
	CRR073301	Leaf 2	36.593
	CRR073302	Leaf 3	31.755
	CRR073303	Juvenile bud 1	35.999
	CRR073304	Juvenile bud 2	20.836
	CRR073305	Juvenile bud 3	34.172
	CRR073306	Third green 1	14.030
	CRR073307	Third green 2	9.657
	CRR073308	Third green 3	14.598
	CRR073309	Second white 1	14.529
	CRR073310	Second white 2	17.392
	CRR073311	Second white 3	18.386
	CRR073312	Silver flowering 1	11.562
	CRR073313	Silver flowering 2	9.383
	CRR073314	Silver flowering 3	9.662
	CRR073315	Gold flowering 1	11.280
	CRR073316	Gold flowering 2	17.950
	CRR073317	Gold flowering 3	14.243
	CRR073318	Tawny withering 1	29.858
	CRR073319	Tawny withering 2	20.835
	CRR073320	Tawny withering 3	28.340