Gene detail

Detail information of GWHGAAZE006995

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075041.1	0	PREDICTED: uncharacterized protein LOC105159627 [Sesamum indicum]
Swissprot	tr\|P42158\|KC1D_ARATH	9E-55	Casein kinase I isoform delta-like
trEMBL	tr\|A0A068V1E4\|A0A068V1E4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313\|EMBL:CDP14324.1}
TAIR10	AT3G03940.1	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35810087	35823572	+
GWHAAZE00000002	mRNA	35810087	35823572	+
GWHAAZE00000002	exon	35810087	35810158	+
GWHAAZE00000002	exon	35810911	35811386	+
GWHAAZE00000002	exon	35811840	35811965	+
GWHAAZE00000002	exon	35812046	35812119	+
GWHAAZE00000002	exon	35812226	35812295	+
GWHAAZE00000002	exon	35812388	35812443	+
GWHAAZE00000002	exon	35812576	35812659	+
GWHAAZE00000002	exon	35812751	35812845	+
GWHAAZE00000002	exon	35813011	35813077	+
GWHAAZE00000002	exon	35813146	35813275	+
GWHAAZE00000002	exon	35813688	35813906	+
GWHAAZE00000002	exon	35814237	35814367	+
GWHAAZE00000002	exon	35816333	35816507	+
GWHAAZE00000002	exon	35816613	35816703	+
GWHAAZE00000002	exon	35818774	35818931	+
GWHAAZE00000002	exon	35821945	35822242	+
GWHAAZE00000002	exon	35823110	35823572	+
GWHAAZE00000002	five_prime_UTR	35810087	35810158	+
GWHAAZE00000002	five_prime_UTR	35810911	35810966	+
GWHAAZE00000002	CDS	35810967	35811386	+
GWHAAZE00000002	CDS	35811840	35811965	+
GWHAAZE00000002	CDS	35812046	35812119	+
GWHAAZE00000002	CDS	35812226	35812295	+
GWHAAZE00000002	CDS	35812388	35812443	+
GWHAAZE00000002	CDS	35812576	35812659	+
GWHAAZE00000002	CDS	35812751	35812845	+
GWHAAZE00000002	CDS	35813011	35813077	+
GWHAAZE00000002	CDS	35813146	35813275	+
GWHAAZE00000002	CDS	35813688	35813906	+
GWHAAZE00000002	CDS	35814237	35814367	+
GWHAAZE00000002	CDS	35816333	35816507	+
GWHAAZE00000002	CDS	35816613	35816703	+
GWHAAZE00000002	CDS	35818774	35818931	+
GWHAAZE00000002	CDS	35821945	35822193	+
GWHAAZE00000002	three_prime_UTR	35822194	35822242	+
GWHAAZE00000002	three_prime_UTR	35823110	35823572	+

Transcript Sequence
>GWHTAAZE007003 CATCCGATTGAGCGTTTTTAAGCTTGGTTCTGCCGATTCTAAAAACATTCATCTGATTCTGCACTTCTCGAGCTTGAAGATTGAAAGACCACAAGGGGAATTGATTGTGATGTGATTTGCATGGGGTTATGATGCCACAGCTGCGAAGTGGAGCACGGAGATCAAAACGGCTTGGTGAGCTTCAGCCTGCCTCTCAACCTGCTGATCAAGGGGAAAATTTGCTAGTGCCTACTCAGAACAGACCCAGAAGGAGAGCTGGTGGAGGAAGAGGAAGGGGTGCTAATGCTGCAGCTGTAGCAAAAGGGCCTTCAGCGGCAATACCTGGGAGGCCAACTGGTGCTGGTAGAGGCAGGGGGGTTAGGTTGATAGATTTAGATCCAGAGACGCCTTGTGAGGTTCTTCCTGAAGCTATTGCTGTTGGGGTTGGAGAACCAGTTTTGAATAGGGTAGAGGTGGTTGCAGATAAGGATATTGCAATGGAAGGTGGGAGTGGAGACAAAGTTATGGGAGTTGAAGAAGATGCAAGTGCAACTCCCGTACCTGAGAGGGTACAAGTAGGTAATTCTCCTGTATATAAGACAGAAAGAAAGTTGGGTAAAGGTGGCTTTGGCCAAGTTTATGTTGGAAGGAGGGTAAGTGGTGGCACCGAGAGAGCAGGAGCAGATGCGATAGAGGTTGCTCTGAAGTTTGAGCACCGGAATAGTAAAGGGTGCAATTATGGCCCTCCTTATGAGTGGCAAGTGTACAACACACTGAATGGGTGTTATGGGATTCCATGGGTTCACTACAAGGGTCGCCAAGGAGATTTTTATATTCTGGTCATGGACATTCTTGGGCCTAGTCTTTGGGATGTTTGGAACTCTTTAGGCCAGTCCACCTGCAACAGGATGTCACCAAACATGGTGGCTTGCATTGCGGTTGAGGCAATTTCAATTCTAGAAAAGCTTCACTTGAAGGGGTTTGTGCATGGAGATGTGAAGCCGGAAAATTTCTTACTTGGTCAACCTGGAACCCCCGATGATAAGAAGCTATATCTTATTGATCTCGGTTTGGCATCTAGATGGAAAGATTCATCATCTGGTCAGCATGTTGAATACGATCAGCGGCCTGATATCTTCAGGGGCACAATAAGATATGCAAGTGTGCACGCACATCTAGGTCGGACAGGAAGTAGAAGGGATGATCTTGAGTCATTGGCATACACATTGATTTTTCTCATCAGGGGAAGGTTACCGTGGCAAGGGTACCAGGGAGACAATAAGAGTTTTCTTGTTTGCAAAAAGAAAATGGCTACTTCACCAGAGCTGATGTGCTGCTTTTGTCCTGCCCCGTTCAGACAGTTCCTTGAAGCAGTCACAAACATGAAATTTGATGAGGAGCCAAACTATTCCAAACTTATATCTTTCTTTGAAAGCCTTATCGAACCGTGCACATCATTGAGGCCAATTAGAATTGACGGAGCTCTCAAGGTCGGGCAAAAGCGTGGAAGATTGCTTATAAATTTGGAAGAAGAAGAGCAACCAAAGAAGAAAATAAGATTAGGTAGCCCTGCTACCCAATGGATATCAGTTTACAACGCACGCCGTCCCATGAAGCAGAGGTATCATTACAATGTTGCAGATTCAAGGCTACGCCAGCACGTAGAGAAGGGGAATGAAGATGGTTTATATATAAGTTGTGTGGCTTCATCTACAAATCTTTGGGCACTAATCATGGATGCTGGAACAGGTTTCTGTTCCCAGGTTTATGAGCTCTCTGCTGTCTTTCTCCATAAGGATTGGATAATGGAACAGTGGGAGAAGAATTATTACATTAGCTCAATAGCCGGTGCAACTAATGGGAGTTCTCTGGTTGTGATGTCCAAAGGAACTCCTTACACCCAGCAATCCTACAAAGTGAGCGAATCTTTTCCTTTCAAGTGGATCAATAAAAAATGGAAAGAAGGTTTTCATGTGACGTCCATGACTACTGCTGGCAGCCGCTGGGGTGTTGTAATGTCCCGAAATTCGGGATATTCTGAACAGGTTGTGGAGCTTGATTTTCTGTACCCAAGCGAAGGAATACACAGGCGTTGGGAGAACGGTTTCCGGATTACTTCTATGGCCGCTACTGCTGATCAAGCAGCCATCATACTGAGTATACCGAGACGTAAAATGATGGATGAAACTCAAGAAACTCTTCGTACCTCTGCCTTCCCGAGCACTCATGTAAAGGTAATTGCTTCTTCCATATTTACTACTTTAATCCAATTCTCTAGAGATTCAATTTCATAACTTGAGTTCAAGTATGACAAGCAAGTTCAAATTTGTTGGCCTTTGTTAAGCTATGGGCGAACGGTTTGCTAGCAGGCTATGGATTATAAACTTTGGTTATAAGTTTTGAAAGCTGAGAAGATTTGCTTTCTGCTCCGTGAAGAAAAAGGAAAAAGAAATGCAGGTGGCTCATTGTAAAATTTTCCATTTGGTTGTGTAATATGGAGAAAGAATTGAAATGAGCTTCTTTCTAATTTGATCAAAGACAACAATGTGGTGATGGTACTGTTGTATCCTCTCCTATGGCAATTGTAGCCAAGGTATCCTTGTACTCTACCCTAAATTTTATCCATGACAAAAAAAAATGGAAAAAAAGAAAAGAAAGAAGATATGGTTGCATAATTTAATCGATATTTTATCGAAAATATTCAGGATTGGAATTCTAGAATCTATGCAAAGTTGTGAGATTTGACTTTTTGTTTGTCCCAAAAAAAGTATTGCGACTCCAATTTGGGGTAGAGCGATGTGTAACA

Network for GWHGAAZE006995

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0281	Protein Kinases CK1_CK1-Pl family Protein Kinases CK1_CK1-Pl Transcription factor NAC family Transcription factor NAC

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	149	395	7.80E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.849
	SRR3591706	second leaf	56.276
	SRR3591707	mature leaf	85.480
	SRR3591708	Shoot apex	49.246
	SRR3591709	Stem	101.135
	SRR3591710	White floral bud	143.568
	SRR3591711	White flower	265.276
	SRR3591712	Green floral bud	133.462
	SRR3591713	Yellow flower	237.775
SRP173429	SRR8316895	Juvenile bud stage	69.437
	SRR8316896	Juvenile bud stage	113.287
	SRR8316897	Juvenile bud stage	44.234
	SRR8316894	Third green stage	43.214
	SRR8316900	Third green stage	121.195
	SRR8316901	Third green stage	137.956
	SRR8316898	Complete white stage	74.120
	SRR8316899	Complete white stage	231.358
	SRR8316903	Complete white stage	122.525
	SRR8316902	Silver flowering stage	97.515
	SRR8316904	Silver flowering stage	132.919
	SRR8316905	Silver flowering stage	62.960
	SRR8316906	Gold flowering stage	159.647
	SRR8316907	Gold flowering stage	168.553
	SRR8316908	Gold flowering stage	158.445
SRP132670	SRR6706286	Control	246.377
	SRR6706287	Light intensity 50%	234.572
	SRR6706288	Light intensity 20%	238.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	66.035
	CNS0095593	Slightly white alabastrum(diploid) 2	74.741
	CNS0095594	Slightly white alabastrum(diploid) 3	66.592
	CNS0095595	Whole white alabastrum(diploid) 2	77.549
	CNS0095596	Whole white alabastrum(diploid) 3	74.195
	CNS0095597	Whole white alabastrum(diploid) 4	84.027
	CNS0095598	Silvery flower (diploied) 1	102.481
	CNS0095599	Silvery flower (diploied) 2	99.399
	CNS0095600	Silvery flower (diploied) 3	243.087
	CNS0095601	Golden flower (diploid) 1	91.671
	CNS0095602	Golden flower (diploid) 2	235.065
	CNS0095603	Golden flower (diploid) 3	229.184
	CNS0095604	Slightly white alabastrum(tetraploid) 1	73.068
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.492
	CNS0095606	Slightly white alabastrum(tetraploid) 3	138.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.252
	CNS0095609	Whole white alabastrum(tetraploid) 3	119.589
	CNS0095610	Silvery flower (tetraploid) 1	295.900
	CNS0095611	Silvery flower (tetraploid) 2	249.418
	CNS0095612	Silvery flower (tetraploid) 3	155.362
	CNS0095613	Golden flower (tetraploid) 1	151.507
	CNS0095614	Golden flower (tetraploid) 2	221.608
	CNS0095615	Golden flower (tetraploid) 3	206.668
CRA001975	CRR073297	Stem 1	81.283
	CRR073298	Stem 2	77.242
	CRR073299	Stem 3	68.052
	CRR073300	Leaf 1	98.682
	CRR073301	Leaf 2	92.306
	CRR073302	Leaf 3	86.045
	CRR073303	Juvenile bud 1	101.869
	CRR073304	Juvenile bud 2	78.006
	CRR073305	Juvenile bud 3	146.476
	CRR073306	Third green 1	121.603
	CRR073307	Third green 2	90.469
	CRR073308	Third green 3	108.636
	CRR073309	Second white 1	74.519
	CRR073310	Second white 2	99.205
	CRR073311	Second white 3	82.087
	CRR073312	Silver flowering 1	57.233
	CRR073313	Silver flowering 2	59.448
	CRR073314	Silver flowering 3	47.999
	CRR073315	Gold flowering 1	56.879
	CRR073316	Gold flowering 2	91.041
	CRR073317	Gold flowering 3	49.553
	CRR073318	Tawny withering 1	60.219
	CRR073319	Tawny withering 2	62.479
	CRR073320	Tawny withering 3	47.970