Detail information of GWHGAAZE006981


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG15354.11.14533E-87LOB domain-containing 4 -like protein [Gossypium arboreum]
Swissprottr|Q9SHE9|LBD4_ARATH4E-66LOB domain-containing protein 4
trEMBLtr|I1L0C8|I1L0C8_SOYBN1E-82Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G02510.1}
TAIR10AT1G31320.14E-45LOB domain-containing protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3559819735601974+
GWHAAZE00000002mRNA3559819735601974+
GWHAAZE00000002exon3559819735598385+
GWHAAZE00000002exon3560166035601974+
GWHAAZE00000002CDS3559819735598385+
GWHAAZE00000002CDS3560166035601974+
Transcript Sequence

Network for GWHGAAZE006981

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB171142.70E-43
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.078
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.253
SRR3591709Stem6.478
SRR3591710White floral bud1.895
SRR3591711White flower4.190
SRR3591712Green floral bud0.823
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.245
SRR8316894Third green stage 0.059
SRR8316900Third green stage 0.619
SRR8316901Third green stage 1.166
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.474
SRR8316903Complete white stage 0.162
SRR8316902Silver flowering stage0.003
SRR8316904Silver flowering stage0.214
SRR8316905Silver flowering stage0.110
SRR8316906Gold flowering stage 0.386
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.219
SRP132670SRR6706286Control5.898
SRR6706287Light intensity 50%3.040
SRR6706288Light intensity 20%2.349
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.113
CNS0095593Slightly white alabastrum(diploid) 20.503
CNS0095594Slightly white alabastrum(diploid) 30.876
CNS0095595Whole white alabastrum(diploid) 20.992
CNS0095596Whole white alabastrum(diploid) 31.587
CNS0095597Whole white alabastrum(diploid) 40.718
CNS0095598Silvery flower (diploied) 12.598
CNS0095599Silvery flower (diploied) 20.352
CNS0095600Silvery flower (diploied) 30.737
CNS0095601Golden flower (diploid) 14.676
CNS0095602Golden flower (diploid) 21.411
CNS0095603Golden flower (diploid) 32.117
CNS0095604Slightly white alabastrum(tetraploid) 11.022
CNS0095605Slightly white alabastrum(tetraploid) 21.940
CNS0095606Slightly white alabastrum(tetraploid) 31.087
CNS0095607Whole white alabastrum(tetraploid) 10.786
CNS0095608Whole white alabastrum(tetraploid) 21.008
CNS0095609Whole white alabastrum(tetraploid) 32.255
CNS0095610Silvery flower (tetraploid) 10.999
CNS0095611Silvery flower (tetraploid) 22.265
CNS0095612Silvery flower (tetraploid) 30.766
CNS0095613Golden flower (tetraploid) 10.063
CNS0095614Golden flower (tetraploid) 20.133
CNS0095615Golden flower (tetraploid) 30.650
CRA001975CRR073297Stem 11.188
CRR073298Stem 21.330
CRR073299Stem 30.838
CRR073300Leaf 12.196
CRR073301Leaf 21.264
CRR073302Leaf 34.223
CRR073303Juvenile bud 11.632
CRR073304Juvenile bud 21.902
CRR073305Juvenile bud 30.561
CRR073306Third green 10.153
CRR073307Third green 20.079
CRR073308Third green 30.078
CRR073309Second white 10.154
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.403
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.514