Gene detail

Detail information of GWHGAAZE006968

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17623.1	1.4258E-177	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SHF3\|AGO2_ARATH	5E-140	Protein argonaute 2
trEMBL	tr\|A0A068VD65\|A0A068VD65_COFCA	5E-178	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G31280.1	6E-119	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35398417	35402363	-
GWHAAZE00000002	mRNA	35398417	35402363	-
GWHAAZE00000002	exon	35401862	35402363	-
GWHAAZE00000002	exon	35400122	35401139	-
GWHAAZE00000002	exon	35398417	35399815	-
GWHAAZE00000002	CDS	35401862	35402363	-
GWHAAZE00000002	CDS	35400122	35401139	-
GWHAAZE00000002	CDS	35398417	35399815	-

Transcript Sequence
>GWHTAAZE006976 ATGCCTCGAAGTCAGTCTGACTCGTCGCTTGTCTCTTCATATCAAAATCGCCGCCGAATGCAGAATGTCCAAATGCAGGCGCCACAGCAGGATAATCCTCCGTATCTCCATCCGACGGTGTCTCCTCACTTTCAACTTCAGCCATTTCATCCACCGTCAATTCTGCAAGTTCACGGTTACGATTCGAGGTGCTGGCAAGGGGCCAGTGCTGAATATGTAGTCCCCCAACTATACTTGTATAATCCACAGGATCTCAGTCTACAGCCAGATCCTCCTCCTCTTCTGACGCTGCCTCGAACTCTTTCTGCACCGTTGTTATTTGATAATCCTCAGCAAATTCAGAATGCCGTTGCGCAGGTGACACCTCCTCCACATTTTGTAATGCCGCCAACTCCTCCGCGGGTAACACCGTTCAATCCGCAAGGTCGCGGTGCTTATCAGATGTACGGACAGTCTCCTCAGCTTCCGATGCCTGATGTAGGAGGATCTCAGATGCCAGATAATAACAAGTCCTTGAATCCCTCTGATGTAGGTACCACACACAGCAGAACCATTAAACTGCTAGCAAATTTTTTCAAGGTTCAGTGTGAAGAACAGGTCAAGCAGTATCAAATTGAGATAAAGCCTGCAGAGAAGACTATAGATCGAAAGATTAAGAGATCGATCTTTAAAGAGGTTTCCTCTCGCAATAAAGAACAAGTAGGAGATTGGTATGTCTACGACGAAGGGGTAGACCGGATATATGGTGGTAGCCCACAAGGTAGCCTAGACGGAAAAAGCTATTCAGTTAATTTTTCGAATGTGGTATACACATTCAGTGCCAAATCTGAAAAAGCTTTCCGTGAACATCTGATGATCGGTAAGTTTCAAGCCCCATTGGATATGGCTCGAGATGTGAAGGGAATTGACTTGTTAATGAAAAAGAAATCATTTAGGAATAATGAAATCGATCTCGGGCGTGGGGTTCAAGCTGTGCGAAGCTTTCAGCAAAGTTTGAAATGGACTGAGCAGGGACTTGCTCTGTGCGCGGACTACTCAGTGTTGCCAACTATGATGCCCATCTTAGTCATTGACTTTCTTAAGCAGAAAGTTGTGGGATTCAGAGACTACATTGAAAAAAAAACACCCGGTGAACTTAGTCAAGAACTTCGGGATAAAGTGGAGGAGGAGTTGAAATACCTTAAAGTTAAGCCTAATCACAGAAATTCTAGCAAGAGCTTTACTATAAAGGGGCTATCAATGGAAATCACGAGGGAAGTCGTGGTAACTGTAAGGAATGAGGTGATTGGACTTGAAGACTATTTCAAAACTAAACACGGTGTGCAAATTAAGCACCTAGACCTTCCTTGTCTGAATCTGGTAACCAAAAAGAACAGAAACTATCTGCCAATGGAGCTATCCGAAATAGTCAAGGTGCAGAAGCACCTCAAGGGGAAGTCGAACTTGGGAAAATATTCAAGGGCTAATCCGAAGGAAAGAGAGGAGAAAATATGTGATTGGATGCAATCTGGGTTTGATAGTCTGTACGAATTGATATTATTATTTTATTTGGTTGACAGGGGGGCTTCTCTCGGAAAATTTGGCCTAAAGGTGGAGACTAACATGACAAAGGTTGAAGGTCGTATAATTGAGTGGCCGTCATTTAAGGATGGCAATCAGAACATAATTAGTGTTGATCAGAATAAGACAAGAAAGGTGAGACCTAAAAGAGTAGTCCAAGGTATGCCAGTTAATAAATGGGCATTAGTCACTTTTAAAGGTGGCAAAACACGGATTGATCGGTTCGGGAGAAGTCTGAAGAGTCATTGCGATTCATTAGGAATGGACTTGGAGCAGCGTTTTGGGACGCATGAATTCGATGTCACAGATCTTTCTGATGTATCTAAAGTTGAGGATATGCTCAAAAAAGTCGTGAATGAAACCAAATTGCAAATCATTATTTGCATAATGGCTAAGAAACATGAAGGGTATAGGTACATTAAGTGGGTATCTGAGACGAAAATCGGAGTTATTACCCAATGTTGTTTGGATGACGATGCTAACAAAGGAGATAATAATTTCTTCCTAAACCTGGCACTGAAAATAAACGCCAAATGCGGAGGGACTAATGCTGAATTGTCTGACCCACTTCCAGGTTTTAACAGAGACAATTCTATCATGCTGATTGGAGCTGATGTCAGTCATCCCGGGGCATCAAATTCGACAAGCCCATCAATAGCGGCTGTGGCTGCTAGCATAGACCCAGCCATGGCTTGCTATGCAGCTCGGGTTCGACCACAAGACCACCGGGAGGAGACCATTGGGCAATTTGGAGAAATGGTCAAGGAGTTGGTCGAGGCTTACAAAAGCAGGAACAATGCCAAGCCAGAGAAAATAATAATTTTTCGAGATGGTGTATCGGAAAGTCAATTCAATAAGGTACTGCACGAGGAATTAGGCAACCTGGAGAGGGCTATCTTTGATCATACGTACAAGCCAACCATCACTCTAGTTGTGGCAATGAAGCGGCACCGAACCCGTCTTTTCATTGACAGTGATGAAAAGAAGCACCAAGGTCCAGAGAATGTGCCCGAGGGGACCGTGGTGGACACAGTGATTGTGCAACCGCAAGGGATTCAGTCCAATTTCTATTTGTGCAGCCACCATGGTTCCATAGGGACGAGCAGACCGACTTACTACCGTGTATTGGACGACAAAAACAATATCACATTGGAGCAGATGGAGAAGTTGGTGTTCCATATTTGCTGCACTTGTGCAAGATGTAGAAACTCTGTGTCCCTTGTGCCACCTGTGTATTATGCACATCTTGCAGCCTTCAGGGGACACGCATTCAGAGAAACATTGGCATTGGAGGAACAGAAGGATCAAAGCAACTACATTCTTGAACGAGAGTTGAGGAATACAATGTTCTTTGTCTGA

Network for GWHGAAZE006968

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02170.23	PAZ	374	477	1.10E-16
PF02171.18	Piwi	646	943	2.00E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.763
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.024
	SRR3591708	Shoot apex	0.455
	SRR3591709	Stem	0.041
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.174
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.112
	SRR8316896	Juvenile bud stage	0.563
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.133
	SRR8316900	Third green stage	0.547
	SRR8316901	Third green stage	0.257
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.009
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.033
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.623
	SRR6706287	Light intensity 50%	0.393
	SRR6706288	Light intensity 20%	0.731
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.083
	CNS0095593	Slightly white alabastrum(diploid) 2	0.086
	CNS0095594	Slightly white alabastrum(diploid) 3	0.227
	CNS0095595	Whole white alabastrum(diploid) 2	0.363
	CNS0095596	Whole white alabastrum(diploid) 3	0.457
	CNS0095597	Whole white alabastrum(diploid) 4	0.779
	CNS0095598	Silvery flower (diploied) 1	0.175
	CNS0095599	Silvery flower (diploied) 2	0.777
	CNS0095600	Silvery flower (diploied) 3	0.055
	CNS0095601	Golden flower (diploid) 1	0.166
	CNS0095602	Golden flower (diploid) 2	0.051
	CNS0095603	Golden flower (diploid) 3	0.066
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.145
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.135
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.006
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.354
	CRR073298	Stem 2	0.180
	CRR073299	Stem 3	0.142
	CRR073300	Leaf 1	0.967
	CRR073301	Leaf 2	0.508
	CRR073302	Leaf 3	0.702
	CRR073303	Juvenile bud 1	2.800
	CRR073304	Juvenile bud 2	1.109
	CRR073305	Juvenile bud 3	1.669
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.014
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.018
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.643
	CRR073319	Tawny withering 2	0.377
	CRR073320	Tawny withering 3	1.274