Gene detail

Detail information of GWHGAAZE006943

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGS47790.1	4.5699E-178	argonaute 3 [Salvia miltiorrhiza]
Swissprot	tr\|Q9SHF3\|AGO2_ARATH	2E-142	Protein argonaute 2
trEMBL	tr\|S5TJ04\|S5TJ04_SALMI	2E-178	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G31280.1	7E-124	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	34649609	34654097	+
GWHAAZE00000002	mRNA	34649609	34654097	+
GWHAAZE00000002	exon	34649609	34649651	+
GWHAAZE00000002	exon	34651415	34652438	+
GWHAAZE00000002	exon	34652741	34654097	+
GWHAAZE00000002	CDS	34649609	34649651	+
GWHAAZE00000002	CDS	34651415	34652438	+
GWHAAZE00000002	CDS	34652741	34654097	+

Transcript Sequence
>GWHTAAZE006951 ATGACTACCTCCTCATCTCCTTCCTCTAATGCTCTTCCAATCTATTCAGATGTCGAGTCCTTGAATCCCCTTGAGGAGCAGTCTCCATTGCGTCACAAAAAAACTACCCCAATTAAACGGCCTGATGGAGGTGCCACACACAGAAATACCATTAAACTGCTTGCAAATTTCTTCAAGGTTCAGTGCAGTCCAGAGGCCACCATAATGCAGTATGACATTGTCGAAAAGGTAGGAGATAGGGTTGCGCTTGTCTACCATGACGGGGTGAATCTGATGTTTGATGGTAGGGGAGAATTTACCCAAGAAGACAAAATCCAGGTTGTACTGGATGTGGCGTCTGGGACCAAGGAGGAATCATACGAACTTCGTATAAGCAACAAAACCGAGCTTGAATGTTCAAAGATTGATGAGTTTTTAAAGGGAAAGCTGTTGGATATCCCACGGGATGTTCTTGGGGGAATTGACTTGTTATTAAAAGGGAATTCCTCTAGTCCATTTGTGCCCGATAATGAAACTGGAGCTCAACCTGAGCGAAGGTTTCAGCAAAGTTTGAAATATACGGAGCAGGGACTCACGCTTTGCATGGACCAATACTCAGTGTTCCCAACTACAGAGCCCTTGCCGGTCATTAGCTTTCTTAAAGAGAATGTTGATGGATTCAAAAGCTTCTTTGATGATGAACGAGTCAAAGAACTTAGTCAAGAACTTCGGAAGGAAGTAGATAAGAAGTTGAAATACCTTATATTTAAGGCTACTCACCGCAGTAGTAGCAAGCCCTTTACTATAAAAGGGCTATCAAATCAAAACACGAGAGACATCACGGTAAGTGTAAGGAAAACAACAATTGGACTTGCCGACTATTATAAAAACAAATACAAGAAGATAATTGACCCACGCCTTCCTTGTCTGGATCTGGGAGGAAAGGGAAGAAACTATCAGCTGCCGATTGAAGTAGTCGTGGTACATAAGCCTCTTAAGGTAAATTCAAATTTATATGAGTATTCAAGGGCTAAGCCGAAGGAAAGAAAGGAGAAAATCTGTGAAAGGATGCAGTCTGTGATTCATGGGGCAGATTTTCTTGGAAAATTTGGCCTAGAGGTGGATACTACGATGACAAAGGTTGAAGGCCATATAATTGGCAAGCCAGTTGTGAAGGCTAAGGCAAGTGGGACTCTTCTTAACAATATCCACGTTGTGAAGGGTGTGTCAATTGAGAAATGGGCGTTTGTCGTTTTCAAGAGTTCAGTTCGTGAAATGCTGAATGAAGATGAAGAAGACAAATATGTGACTGGCCTAAAGACTGCATGCAAGAATCTAGGGATAGGCTTGAAGGAGCCTTCCGTCAAATGTAAATTTGATATCCAAGTGCTTTCTAATGTATCTCTAGTTGAGAATATGCTCAGAGACGTCGTTAAATCCGCTGACACCAAATTGGAAATCATTATTTGTATGATGCCAGAGAAACATGAAGGTTATAAGTACATTAAGTGGGTATCCGAGACGAAAATTGGAGTTATTACCCAATGTTGTTTAGCCTCCGGCCCAAAAAAAGGAGAGTGTCATTTCTTCAGAAACCTGGCCCTGAAAATAAATGCCAAACTCGGAGGGATTAATGTTGAATTAGATAACCCATTTGAAGGTTTTAAGAAAGAACACATCATGCTGGTTGGGGCCAGTATTAGTCATCCCGAGGCACCAAATAAATATAGCTCGTCAATAGCAGCGGTGGCTGCAAACATAGACCGTGCCATGGCTCGTTACGCAGCTCGGTTTGAACCCCAATATCACCAAAAGGAGAAGATTCTGGACTTCGGACCAATGGTCAAGGAGTTGGTCGACGCTTACAAAAGTGAGAACAAGGCCGAGCCAAAGAAAATAATAATTTTTCGACAAGGTGTATCAGAAAGTCAAATTGACATGGTTCTGAACAAAGAATTACCCAATCTGAAGTCAGCTATCTCTGATCGAGGAACGTACAGTCCATCCATCACTCTTGTTGTGGCGGTGAAGCGGCACCGAACCCGTCTTTTTATTGATGACGAGAACGATGAGAACCCAAATCTGGCAGAGAATGTGCCTCCAGGGACGGTGGTGGACACGAAGATCGTGCAACCAAATCAATGGAACTTCTATTTGTGCAGCCACAATAGTTCCTCAGGGACAAGCAAACCAACTTACTACCGTGTCTTGTACGACGAGAACAAACTGACGTCCAAGCAGATTCAGGAGTTGATCTACAACATTTGCTTCACTTGTGCAAGATGTACTAATCCCATGTCCGTTGTCCCGCCGCTGTATTATGCCCATCTTGCCGCCTTGAGAGGACAAGCATTCAGAGAAGCATTGCCGGAGGAGGACATCCAAGGGGTTCAAAGTTACTACACACTTGCAAAGAAGCTGAAGAATACTATGTTCTTTGTCTGA

Network for GWHGAAZE006943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02170.23	PAZ	228	323	3.80E-11
PF02171.18	Piwi	480	776	2.90E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.546
	SRR3591706	second leaf	1.830
	SRR3591707	mature leaf	0.384
	SRR3591708	Shoot apex	2.598
	SRR3591709	Stem	0.605
	SRR3591710	White floral bud	0.319
	SRR3591711	White flower	0.130
	SRR3591712	Green floral bud	1.507
	SRR3591713	Yellow flower	0.068
SRP173429	SRR8316895	Juvenile bud stage	0.661
	SRR8316896	Juvenile bud stage	1.378
	SRR8316897	Juvenile bud stage	1.694
	SRR8316894	Third green stage	0.437
	SRR8316900	Third green stage	0.960
	SRR8316901	Third green stage	1.152
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.351
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.374
	SRR6706287	Light intensity 50%	0.286
	SRR6706288	Light intensity 20%	0.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.194
	CNS0095593	Slightly white alabastrum(diploid) 2	0.952
	CNS0095594	Slightly white alabastrum(diploid) 3	1.968
	CNS0095595	Whole white alabastrum(diploid) 2	1.005
	CNS0095596	Whole white alabastrum(diploid) 3	0.819
	CNS0095597	Whole white alabastrum(diploid) 4	0.469
	CNS0095598	Silvery flower (diploied) 1	0.116
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.022
	CNS0095603	Golden flower (diploid) 3	0.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.255
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.479
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.455
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.600
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.033
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.662
	CRR073298	Stem 2	0.419
	CRR073299	Stem 3	0.552
	CRR073300	Leaf 1	0.507
	CRR073301	Leaf 2	0.603
	CRR073302	Leaf 3	0.679
	CRR073303	Juvenile bud 1	0.310
	CRR073304	Juvenile bud 2	0.025
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.032
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.016
	CRR073317	Gold flowering 3	0.045
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.034
	CRR073320	Tawny withering 3	0.000