Gene detail

Detail information of GWHGAAZE006938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275982.1	9.6262E-167	PREDICTED: peroxisomal 2,4-dienoyl-CoA reductase [Vitis vinifera]
Swissprot	tr\|Q9LTV6\|DECR2_ARATH	2E-144	Peroxisomal 2,4-dienoyl-CoA reductase
trEMBL	tr\|A5AHN8\|A5AHN8_VITVI	4E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73418.1}
TAIR10	AT3G12800.1	1E-115	short-chain dehydrogenase-reductase B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	34520996	34523996	+
GWHAAZE00000002	mRNA	34520996	34523996	+
GWHAAZE00000002	exon	34520996	34521181	+
GWHAAZE00000002	exon	34521744	34521903	+
GWHAAZE00000002	exon	34522451	34522620	+
GWHAAZE00000002	exon	34522711	34522933	+
GWHAAZE00000002	exon	34523848	34523996	+
GWHAAZE00000002	CDS	34520996	34521181	+
GWHAAZE00000002	CDS	34521744	34521903	+
GWHAAZE00000002	CDS	34522451	34522620	+
GWHAAZE00000002	CDS	34522711	34522933	+
GWHAAZE00000002	CDS	34523848	34523996	+

Transcript Sequence
>GWHTAAZE006946 ATGGAGTCTCCATTCAAGGCAGATATACTGAAAGGAAAAGTGGCGCTATTGACTGGTGGTGGATCAGGAATTGGGTATGAAATCTCGGTGCAACTGGGTAAACATGGAGCTTCCATTGTGATTATGGGTCGACGTAAAAATGTTATTGATTCTGCTGTCTCTTCTCTTCGATCTCTTGGCATTCAAGCAACTGGGTTTGAAGGAGATGTTAGAAACCAAGAAGACGCAGTGAGAGTGGTAGAATCAACAATTAAGGAATTTGGGAGACTTGACATTCTTGTTAATTCAGCAGCAGGCAATTTCCTAGCCCCTGCTGAAGATTTATCCCCCAAGGGCTTTCGAACAGTGATGGAAATAGATGCAGTTGGCACTTTTACAATGTGCCATGCAGCTCTCAAGTATCTAAAGAAAGGAGGACCAGGGAAAGAACCATCAAGTTGTGGCATAATCATAAACATAACAGCAACTTTGCATATTACAGCAACATGGTACCAAATCCATGTTTCTGCTGCCAAGGCGGCAGTTGATAGTATTACGAGGAGCTTGGCGTTAGAATGGGGAACAGATTATGAAATAAGAGTTAATGGGATTGCACCAGGACCTATTGAAGACACTGCTGGTGTGAGTAAACTTACAACTGAAAGTGTGCTGAAAGAATCTATAGGAACTGTTCCTCTGTATAGAATGGGGAAGAAATGGGACATTGCTATGGCTGCTCTCTATCTTGCTTGTGATGCAGGGAGACATGTGAATGGAACAACAATGATCCTCGACGCAGGGCTGTGGTTGAGCAGAACTCGCAAAGTCTCAAAAGAGGCGGTGAAGCAACTTTCTCAATCAGTCGAGAAGAAGTCTCGGGCTGTTGGGATTCCCACAAGCAAACTATAA

Network for GWHGAAZE006938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	22	261	1.60E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13237	DECR2	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.104
	SRR3591707	mature leaf	0.146
	SRR3591708	Shoot apex	0.928
	SRR3591709	Stem	1.372
	SRR3591710	White floral bud	3.470
	SRR3591711	White flower	0.905
	SRR3591712	Green floral bud	3.491
	SRR3591713	Yellow flower	1.628
SRP173429	SRR8316895	Juvenile bud stage	0.780
	SRR8316896	Juvenile bud stage	0.765
	SRR8316897	Juvenile bud stage	0.944
	SRR8316894	Third green stage	0.139
	SRR8316900	Third green stage	0.951
	SRR8316901	Third green stage	1.015
	SRR8316898	Complete white stage	0.544
	SRR8316899	Complete white stage	4.280
	SRR8316903	Complete white stage	1.211
	SRR8316902	Silver flowering stage	0.168
	SRR8316904	Silver flowering stage	0.425
	SRR8316905	Silver flowering stage	0.127
	SRR8316906	Gold flowering stage	0.566
	SRR8316907	Gold flowering stage	0.674
	SRR8316908	Gold flowering stage	0.855
SRP132670	SRR6706286	Control	2.101
	SRR6706287	Light intensity 50%	1.773
	SRR6706288	Light intensity 20%	1.728
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.285
	CNS0095593	Slightly white alabastrum(diploid) 2	3.476
	CNS0095594	Slightly white alabastrum(diploid) 3	1.648
	CNS0095595	Whole white alabastrum(diploid) 2	3.357
	CNS0095596	Whole white alabastrum(diploid) 3	1.609
	CNS0095597	Whole white alabastrum(diploid) 4	1.759
	CNS0095598	Silvery flower (diploied) 1	4.884
	CNS0095599	Silvery flower (diploied) 2	5.284
	CNS0095600	Silvery flower (diploied) 3	2.040
	CNS0095601	Golden flower (diploid) 1	4.328
	CNS0095602	Golden flower (diploid) 2	3.057
	CNS0095603	Golden flower (diploid) 3	3.861
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.217
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.271
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.220
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.633
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.675
	CNS0095610	Silvery flower (tetraploid) 1	0.294
	CNS0095611	Silvery flower (tetraploid) 2	0.907
	CNS0095612	Silvery flower (tetraploid) 3	0.505
	CNS0095613	Golden flower (tetraploid) 1	0.186
	CNS0095614	Golden flower (tetraploid) 2	0.671
	CNS0095615	Golden flower (tetraploid) 3	0.276
CRA001975	CRR073297	Stem 1	1.062
	CRR073298	Stem 2	0.470
	CRR073299	Stem 3	0.425
	CRR073300	Leaf 1	2.093
	CRR073301	Leaf 2	1.068
	CRR073302	Leaf 3	0.794
	CRR073303	Juvenile bud 1	1.973
	CRR073304	Juvenile bud 2	0.903
	CRR073305	Juvenile bud 3	1.334
	CRR073306	Third green 1	0.156
	CRR073307	Third green 2	0.237
	CRR073308	Third green 3	0.163
	CRR073309	Second white 1	0.588
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.160
	CRR073312	Silver flowering 1	0.409
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.454
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.283
	CRR073318	Tawny withering 1	2.371
	CRR073319	Tawny withering 2	3.640
	CRR073320	Tawny withering 3	2.088