Detail information of GWHGAAZE006931


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276004.20PREDICTED: copper-transporting ATPase RAN1 [Vitis vinifera]
Swissprottr|Q9S7J8|HMA7_ARATH0Copper-transporting ATPase RAN1
trEMBLtr|A5B663|A5B663_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN69730.1}
TAIR10AT5G44790.10copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3432806334338855-
GWHAAZE00000002mRNA3432806334338855-
GWHAAZE00000002exon3433854434338855-
GWHAAZE00000002exon3433497434335588-
GWHAAZE00000002exon3433390534334334-
GWHAAZE00000002exon3433325534333446-
GWHAAZE00000002exon3433312234333162-
GWHAAZE00000002exon3433283834332896-
GWHAAZE00000002exon3433240634332748-
GWHAAZE00000002exon3433119634331396-
GWHAAZE00000002exon3433013934330396-
GWHAAZE00000002exon3432889834329290-
GWHAAZE00000002exon3432806334328086-
GWHAAZE00000002CDS3433854434338855-
GWHAAZE00000002CDS3433497434335588-
GWHAAZE00000002CDS3433390534334334-
GWHAAZE00000002CDS3433325534333446-
GWHAAZE00000002CDS3433312234333162-
GWHAAZE00000002CDS3433283834332896-
GWHAAZE00000002CDS3433240634332748-
GWHAAZE00000002CDS3433119634331396-
GWHAAZE00000002CDS3433013934330396-
GWHAAZE00000002CDS3432889834329290-
GWHAAZE00000002CDS3432806334328086-
Transcript Sequence

Network for GWHGAAZE006931

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00403.27HMA581181.20E-12
PF00403.27HMA1402004.80E-14
PF00122.21E1-E2_ATPase4405149.30E-13
PF00122.21E1-E2_ATPase5146071.40E-13
PF00702.27Hydrolase6248633.30E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17686copA, ctpA, ATP7 MAPK signaling pathway - plant map04016

Gene Ontology

GO term OntologyName
GO:0006812biological_processcation transport
GO:0030001biological_processmetal ion transport
GO:0016021cellular_componentintegral component of membrane
GO:0019829molecular_functionATPase-coupled cation transmembrane transporter activity
GO:0046872molecular_functionmetal ion binding
GO:0005507molecular_functioncopper ion binding
GO:0000166molecular_functionnucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf53.659
SRR3591706second leaf14.449
SRR3591707mature leaf17.397
SRR3591708Shoot apex19.588
SRR3591709Stem113.018
SRR3591710White floral bud79.319
SRR3591711White flower37.161
SRR3591712Green floral bud47.904
SRR3591713Yellow flower44.310
SRP173429 SRR8316895Juvenile bud stage 15.764
SRR8316896Juvenile bud stage 23.751
SRR8316897Juvenile bud stage 9.707
SRR8316894Third green stage 9.244
SRR8316900Third green stage 30.759
SRR8316901Third green stage 27.052
SRR8316898Complete white stage 14.852
SRR8316899Complete white stage 42.142
SRR8316903Complete white stage 26.867
SRR8316902Silver flowering stage18.610
SRR8316904Silver flowering stage25.413
SRR8316905Silver flowering stage14.200
SRR8316906Gold flowering stage 55.284
SRR8316907Gold flowering stage 54.651
SRR8316908Gold flowering stage 59.257
SRP132670SRR6706286Control35.284
SRR6706287Light intensity 50%34.957
SRR6706288Light intensity 20%33.351
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.183
CNS0095593Slightly white alabastrum(diploid) 218.513
CNS0095594Slightly white alabastrum(diploid) 318.761
CNS0095595Whole white alabastrum(diploid) 229.953
CNS0095596Whole white alabastrum(diploid) 332.614
CNS0095597Whole white alabastrum(diploid) 445.578
CNS0095598Silvery flower (diploied) 119.962
CNS0095599Silvery flower (diploied) 224.444
CNS0095600Silvery flower (diploied) 341.262
CNS0095601Golden flower (diploid) 124.025
CNS0095602Golden flower (diploid) 250.707
CNS0095603Golden flower (diploid) 350.832
CNS0095604Slightly white alabastrum(tetraploid) 125.272
CNS0095605Slightly white alabastrum(tetraploid) 220.521
CNS0095606Slightly white alabastrum(tetraploid) 337.283
CNS0095607Whole white alabastrum(tetraploid) 140.020
CNS0095608Whole white alabastrum(tetraploid) 255.697
CNS0095609Whole white alabastrum(tetraploid) 340.515
CNS0095610Silvery flower (tetraploid) 135.193
CNS0095611Silvery flower (tetraploid) 243.949
CNS0095612Silvery flower (tetraploid) 352.884
CNS0095613Golden flower (tetraploid) 138.029
CNS0095614Golden flower (tetraploid) 242.729
CNS0095615Golden flower (tetraploid) 360.755
CRA001975CRR073297Stem 142.897
CRR073298Stem 237.386
CRR073299Stem 337.273
CRR073300Leaf 149.451
CRR073301Leaf 238.620
CRR073302Leaf 335.055
CRR073303Juvenile bud 154.570
CRR073304Juvenile bud 240.735
CRR073305Juvenile bud 364.920
CRR073306Third green 153.610
CRR073307Third green 249.986
CRR073308Third green 353.540
CRR073309Second white 150.722
CRR073310Second white 250.158
CRR073311Second white 370.686
CRR073312Silver flowering 195.946
CRR073313Silver flowering 298.410
CRR073314Silver flowering 397.561
CRR073315Gold flowering 121.731
CRR073316Gold flowering 217.345
CRR073317Gold flowering 319.942
CRR073318Tawny withering 176.708
CRR073319Tawny withering 246.834
CRR073320Tawny withering 380.196