Gene detail

Detail information of GWHGAAZE006929

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008235237.1	PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 isoform X1 [Prunus mume]
Swissprot	tr\|Q9C823\|Y1523_ARATH	C-type lectin receptor-like tyrosine-protein kinase At1g52310 (Precursor)
trEMBL	tr\|M5VVH4\|M5VVH4_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ05392.1}
TAIR10	AT1G52310.1	protein kinase family protein / C-type lectin domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	34302174	34308161	-
GWHAAZE00000002	mRNA	34302174	34308161	-
GWHAAZE00000002	exon	34302174	34302681	-
GWHAAZE00000002	exon	34303376	34303946	-
GWHAAZE00000002	exon	34304884	34305309	-
GWHAAZE00000002	exon	34307838	34307886	-
GWHAAZE00000002	exon	34307973	34308161	-
GWHAAZE00000002	five_prime_UTR	34308057	34308161	-
GWHAAZE00000002	CDS	34307973	34308056	-
GWHAAZE00000002	CDS	34307838	34307886	-
GWHAAZE00000002	CDS	34304884	34305309	-
GWHAAZE00000002	CDS	34303376	34303946	-
GWHAAZE00000002	CDS	34302174	34302681	-

Transcript Sequence
>GWHTAAZE006937 CTTCTCTTCAGACATCTTTTAAATTTTTTCTTTCTACACCCATGTTCATTTCCTGCACCTAACTGCTCATTTTCGTTTTCTAGGGTTTATAAAATTGCTAAAACGATGGAAGAGAATGTGCTGTTGTATCCATTGATTCTCTCTCTTCTGATTGCTTCCTTTGTTATTGGACTCGATGCTTCCAACACGGTTTTCAATGAATCAATCGATGCGGATTTAGTTAAAAACAGCAGCGAAGCACCGTGCCCTTCTGGCTGGCATATGAGCCCTAGTAAGAGAAAGTGCTTCGGATATATGGCAAGCTCTCAGTCATGGGACGAGTCAGAGATCCGCTGCAATGGCTATAATGGACACCTCGCAGCTCTAACATCACTTCAAGAACTTAGTCTTGCTCAAAATATGTGTGTTGAAATTGCTAATGGATGCTGGGTTGGAGGTAGAGGCATTAATATTACAGTAGGTTTGAGTTGGAAATGGTCCGACAACACATCTCATTGGAATGAAACAATCATTCCTAAGACCACTCTCAAGTCTGGGTGCACCAATTTTCCATGCCACAATGTTGATCCGATTTCACTGTGTACGTTGGTGATTAATGGAAATTCATCACTTCTGGCTGGGAGATGCAATACGTCTCGTGCATTTATATGCATGCTTGATATAGAGAACAAATGTTACCACATGCGCTGCCACAGGGAATATCTTATTATCCTTGTTGTTGTGAGTGGGTTGATTCTCTTCACAACGCTAGCTGTCGTTATTTGGCTCCTTGTATATAAGCGGAGCAAGAGGAGAAGAAAATCTCGCAAACTATCAAATCCGGCAGCATTGGCATTAGTTCCCCCAGCATGGAAAGTCTTCAACCGTGAGGAGCTCAAGTCCATGACAAAGAATTTTAGTGAAGGAAACCGTCTTCTTGGGGATGCTAAAACAGGTGGCACATATAGTGGGCTTCTACCCGATGGATCAAGGGTGGCGGTTAAAAGGCTAAAGAGGTCTAGTTTCCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGAAGGGTAGCAAGGCTTCGTCATCCAAATTTGGTGGCAGTGAAAGGTTGCTGCTATGATCACGGGGATCGCTATATTGTTTATGAGTTTATAATACATGGGCCCTTGGATAGATGGTTGCATCATATTCCGAGGGGCGGTAGGAGTTTGGATTGGGCCATGAGAATGAAAGTTGCCACCACTCTTGCTCAAGGAATTGCGTTCCTCCATGACAAGGTGAAGCCACAAGTGGTGCACCGAGACATCCGGGCTAGCAACGTACTTCTTGATGAGGAGTTCGGTGCCCACTTAATGGGGGTCGGTCTATCAAAATTTGTCCCTTGGGAAGTGATGCATGAGAGGACAGTGATGGCCGGTGGCACTCACGGTTACCTCGCCCCCGAGTTTGTTTACAGAAACGAGCTCACCACAAAGAGTGACGTTTACAGCTTTGGAGTTTTATTACTCGAAATTGTTAGTGGGCGTAGGCCAGCCCAAGCAGTTGATTCGGTGGGTTGGCAGAGTATATTCGAGTGGGCCACCCCTCTTGTCCAGTCTCACCGCTACTTAGAGCTTTTGGACCCTCTTGTATTGTCGTCTTCCTCGCAAATACCAGAGGCCGGAGTTATTCAAAAGGTGGTGGACCTTGTTTATTCGTGCACTCAACATGTACCGTCTATGCGCCCAAGAATGTCGCATGTTGTTCATCAGTTGCAACAGTTGGCCTAG

Network for GWHGAAZE006929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00059.22	Lectin_C	67	183	7.80E-09
PF07714.18	PK_Tyr_Ser-Thr	271	541	1.40E-38

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_C-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.882
	SRR3591706	second leaf	14.745
	SRR3591707	mature leaf	12.383
	SRR3591708	Shoot apex	32.676
	SRR3591709	Stem	16.362
	SRR3591710	White floral bud	16.857
	SRR3591711	White flower	13.781
	SRR3591712	Green floral bud	18.102
	SRR3591713	Yellow flower	6.412
SRP173429	SRR8316895	Juvenile bud stage	15.887
	SRR8316896	Juvenile bud stage	16.507
	SRR8316897	Juvenile bud stage	8.774
	SRR8316894	Third green stage	6.500
	SRR8316900	Third green stage	16.967
	SRR8316901	Third green stage	15.364
	SRR8316898	Complete white stage	6.163
	SRR8316899	Complete white stage	27.603
	SRR8316903	Complete white stage	7.854
	SRR8316902	Silver flowering stage	3.538
	SRR8316904	Silver flowering stage	5.940
	SRR8316905	Silver flowering stage	2.497
	SRR8316906	Gold flowering stage	7.974
	SRR8316907	Gold flowering stage	7.249
	SRR8316908	Gold flowering stage	9.092
SRP132670	SRR6706286	Control	15.425
	SRR6706287	Light intensity 50%	16.077
	SRR6706288	Light intensity 20%	17.443
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.242
	CNS0095593	Slightly white alabastrum(diploid) 2	12.168
	CNS0095594	Slightly white alabastrum(diploid) 3	10.066
	CNS0095595	Whole white alabastrum(diploid) 2	8.976
	CNS0095596	Whole white alabastrum(diploid) 3	5.461
	CNS0095597	Whole white alabastrum(diploid) 4	7.367
	CNS0095598	Silvery flower (diploied) 1	16.268
	CNS0095599	Silvery flower (diploied) 2	11.997
	CNS0095600	Silvery flower (diploied) 3	13.860
	CNS0095601	Golden flower (diploid) 1	14.447
	CNS0095602	Golden flower (diploid) 2	15.455
	CNS0095603	Golden flower (diploid) 3	17.446
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.339
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.911
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.217
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.760
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.342
	CNS0095610	Silvery flower (tetraploid) 1	10.638
	CNS0095611	Silvery flower (tetraploid) 2	12.171
	CNS0095612	Silvery flower (tetraploid) 3	9.505
	CNS0095613	Golden flower (tetraploid) 1	4.429
	CNS0095614	Golden flower (tetraploid) 2	8.902
	CNS0095615	Golden flower (tetraploid) 3	7.362
CRA001975	CRR073297	Stem 1	28.349
	CRR073298	Stem 2	25.305
	CRR073299	Stem 3	30.397
	CRR073300	Leaf 1	22.247
	CRR073301	Leaf 2	23.222
	CRR073302	Leaf 3	21.239
	CRR073303	Juvenile bud 1	16.352
	CRR073304	Juvenile bud 2	12.888
	CRR073305	Juvenile bud 3	18.774
	CRR073306	Third green 1	3.295
	CRR073307	Third green 2	4.053
	CRR073308	Third green 3	5.205
	CRR073309	Second white 1	5.634
	CRR073310	Second white 2	2.679
	CRR073311	Second white 3	3.509
	CRR073312	Silver flowering 1	2.170
	CRR073313	Silver flowering 2	5.102
	CRR073314	Silver flowering 3	2.049
	CRR073315	Gold flowering 1	16.519
	CRR073316	Gold flowering 2	16.858
	CRR073317	Gold flowering 3	20.253
	CRR073318	Tawny withering 1	21.992
	CRR073319	Tawny withering 2	19.639
	CRR073320	Tawny withering 3	15.994