Gene detail

Detail information of GWHGAAZE006928

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077800.1	1.8871E-153	PREDICTED: putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C [Sesamum indicum]
trEMBL	tr\|B9GY14\|B9GY14_POPTR	1E-150	Phosphatidylinositolglycan synthase family protein {ECO:0000313\|EMBL:EEE78321.2}
TAIR10	AT2G34980.1	4E-86	phosphatidylinositolglycan synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	34300048	34300890	+
GWHAAZE00000002	mRNA	34300048	34300890	+
GWHAAZE00000002	exon	34300048	34300890	+
GWHAAZE00000002	CDS	34300048	34300890	+

Transcript Sequence
>GWHTAAZE006936 ATGCAACTGGGGTTTGATGATAACCACACCGATGATTCTTTTCTTGAAGAAATGGTCATGAATGCCAACGTTGTCAAACGGGACATGCTCAAAGTAATGCTAGACTCGGTTTCCATTTCTCAATATCTTTGTATAGTTTCCCTCGTAGTCTTGGTGTGGGCCCATACGCTTGGGTCCACTTTCAACGAGAACTCTCTCTTACTTCTTGACATAACCCTTCTTGGGTCCGGTTTCTTTGTCCTTCTCTTAACTGCAGAAATGCTTTCCTTTCACCTTCTCCTCAACTATGTCCTCAAAATCTCGTATTTCATAACGGGTTTATACGCGTTATCTCCTATCTACCACACGCTTACGAGGTCCATAAGCTCGGATACCATATGGGCGCTCACAACTTCACTTGTCATACTCCACCTCTTCCTCCATAACTACGCAGGGTCCACCGTAAAAGCTCCCGGGGCCCTTGATAAGCCAACCTTATCGAGCAATATATCTTTAAATTCTTCCATCGTGGCTTCCCTTTTGATTGCTTCTCGACTTCCATCAAGGCTCCATGTGTTTGCTATAGTCCTTTTCTCTTTGCAAGTCTTTCTATTTGCGCCGCTGGTGACTTACTGTATTAAGAAATACTCCTTTCGTTTGCATCTCGGCTTTTCATTTGGATTGATGGCTGTTACATTGGGTTTTGTGTATAGGTTTGATGGGTTGGTTTTTGTGGTGTTGTTGGGTGTTTTGGTTTTTGTTAATTTGGTGTGTCCTTGGTGGTTGATTAGGATTCAAGAATACAAGTTTGAGATCAATGGTCCTTGGGATGAGGCCAAGCTTTGCTTTAATATAACAGACTGA

Network for GWHGAAZE006928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06432.12	GPI2	4	270	8.30E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03859	PIGC, GPI2	Metabolic pathways	map01100
K03859	PIGC, GPI2	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0016021	cellular_component	integral component of membrane
GO:0017176	molecular_function	phosphatidylinositol N-acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.390
	SRR3591706	second leaf	8.600
	SRR3591707	mature leaf	15.934
	SRR3591708	Shoot apex	13.522
	SRR3591709	Stem	13.314
	SRR3591710	White floral bud	11.584
	SRR3591711	White flower	11.675
	SRR3591712	Green floral bud	15.809
	SRR3591713	Yellow flower	11.195
SRP173429	SRR8316895	Juvenile bud stage	3.684
	SRR8316896	Juvenile bud stage	4.840
	SRR8316897	Juvenile bud stage	1.484
	SRR8316894	Third green stage	3.700
	SRR8316900	Third green stage	11.256
	SRR8316901	Third green stage	12.980
	SRR8316898	Complete white stage	3.662
	SRR8316899	Complete white stage	9.778
	SRR8316903	Complete white stage	7.508
	SRR8316902	Silver flowering stage	4.328
	SRR8316904	Silver flowering stage	7.123
	SRR8316905	Silver flowering stage	2.945
	SRR8316906	Gold flowering stage	11.669
	SRR8316907	Gold flowering stage	10.216
	SRR8316908	Gold flowering stage	9.496
SRP132670	SRR6706286	Control	9.049
	SRR6706287	Light intensity 50%	8.648
	SRR6706288	Light intensity 20%	8.819
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.724
	CNS0095593	Slightly white alabastrum(diploid) 2	9.010
	CNS0095594	Slightly white alabastrum(diploid) 3	11.149
	CNS0095595	Whole white alabastrum(diploid) 2	11.121
	CNS0095596	Whole white alabastrum(diploid) 3	12.883
	CNS0095597	Whole white alabastrum(diploid) 4	10.245
	CNS0095598	Silvery flower (diploied) 1	9.995
	CNS0095599	Silvery flower (diploied) 2	6.235
	CNS0095600	Silvery flower (diploied) 3	7.726
	CNS0095601	Golden flower (diploid) 1	5.024
	CNS0095602	Golden flower (diploid) 2	11.191
	CNS0095603	Golden flower (diploid) 3	9.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.893
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.510
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.504
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.503
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.472
	CNS0095610	Silvery flower (tetraploid) 1	11.980
	CNS0095611	Silvery flower (tetraploid) 2	11.431
	CNS0095612	Silvery flower (tetraploid) 3	7.370
	CNS0095613	Golden flower (tetraploid) 1	9.969
	CNS0095614	Golden flower (tetraploid) 2	13.961
	CNS0095615	Golden flower (tetraploid) 3	14.261
CRA001975	CRR073297	Stem 1	10.849
	CRR073298	Stem 2	9.378
	CRR073299	Stem 3	5.931
	CRR073300	Leaf 1	8.866
	CRR073301	Leaf 2	9.617
	CRR073302	Leaf 3	3.865
	CRR073303	Juvenile bud 1	6.075
	CRR073304	Juvenile bud 2	5.250
	CRR073305	Juvenile bud 3	7.428
	CRR073306	Third green 1	2.260
	CRR073307	Third green 2	1.012
	CRR073308	Third green 3	1.578
	CRR073309	Second white 1	2.812
	CRR073310	Second white 2	2.272
	CRR073311	Second white 3	4.634
	CRR073312	Silver flowering 1	4.347
	CRR073313	Silver flowering 2	2.205
	CRR073314	Silver flowering 3	4.166
	CRR073315	Gold flowering 1	3.241
	CRR073316	Gold flowering 2	4.428
	CRR073317	Gold flowering 3	2.064
	CRR073318	Tawny withering 1	5.908
	CRR073319	Tawny withering 2	4.896
	CRR073320	Tawny withering 3	8.435