Detail information of GWHGAAZE006896


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010655858.10PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Vitis vinifera]
Swissprottr|Q8GUI6|JMJ14_ARATH0Probable lysine-specific demethylase JMJ14
trEMBLtr|F6I3H0|F6I3H0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB61488.1}
TAIR10AT4G20400.10JUMONJI 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3381216933822205-
GWHAAZE00000002mRNA3381216933822205-
GWHAAZE00000002exon3381216933812722-
GWHAAZE00000002exon3381336933813551-
GWHAAZE00000002exon3381365333813682-
GWHAAZE00000002exon3381511033815213-
GWHAAZE00000002exon3381555733816382-
GWHAAZE00000002exon3381717933817547-
GWHAAZE00000002exon3381854533818706-
GWHAAZE00000002exon3381926133819431-
GWHAAZE00000002exon3382017933820697-
GWHAAZE00000002exon3382111533821198-
GWHAAZE00000002exon3382141033821478-
GWHAAZE00000002exon3382204133822205-
GWHAAZE00000002CDS3382204133822205-
GWHAAZE00000002CDS3382141033821478-
GWHAAZE00000002CDS3382111533821198-
GWHAAZE00000002CDS3382017933820697-
GWHAAZE00000002CDS3381926133819431-
GWHAAZE00000002CDS3381854533818706-
GWHAAZE00000002CDS3381717933817547-
GWHAAZE00000002CDS3381555733816382-
GWHAAZE00000002CDS3381511033815213-
GWHAAZE00000002CDS3381365333813682-
GWHAAZE00000002CDS3381336933813551-
GWHAAZE00000002CDS3381233033812722-
GWHAAZE00000002three_prime_UTR3381216933812329-
Transcript Sequence

Network for GWHGAAZE006896

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02375.18JmjN991325.30E-15
PF02373.23JmjC3244403.50E-46
PF02928.17zf-C5HC25476001.60E-10
PF05964.15FYRN7678122.70E-07
PF05965.15FYRC8299117.40E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.311
SRR3591706second leaf7.033
SRR3591707mature leaf9.193
SRR3591708Shoot apex12.853
SRR3591709Stem19.292
SRR3591710White floral bud20.226
SRR3591711White flower22.211
SRR3591712Green floral bud25.464
SRR3591713Yellow flower15.830
SRP173429 SRR8316895Juvenile bud stage 13.529
SRR8316896Juvenile bud stage 20.423
SRR8316897Juvenile bud stage 11.290
SRR8316894Third green stage 5.660
SRR8316900Third green stage 12.413
SRR8316901Third green stage 15.827
SRR8316898Complete white stage 4.798
SRR8316899Complete white stage 14.638
SRR8316903Complete white stage 8.136
SRR8316902Silver flowering stage4.253
SRR8316904Silver flowering stage6.875
SRR8316905Silver flowering stage2.556
SRR8316906Gold flowering stage 10.783
SRR8316907Gold flowering stage 10.440
SRR8316908Gold flowering stage 10.974
SRP132670SRR6706286Control9.289
SRR6706287Light intensity 50%9.213
SRR6706288Light intensity 20%8.630
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.661
CNS0095593Slightly white alabastrum(diploid) 29.338
CNS0095594Slightly white alabastrum(diploid) 315.419
CNS0095595Whole white alabastrum(diploid) 213.871
CNS0095596Whole white alabastrum(diploid) 312.448
CNS0095597Whole white alabastrum(diploid) 411.635
CNS0095598Silvery flower (diploied) 112.937
CNS0095599Silvery flower (diploied) 212.760
CNS0095600Silvery flower (diploied) 315.939
CNS0095601Golden flower (diploid) 112.042
CNS0095602Golden flower (diploid) 219.882
CNS0095603Golden flower (diploid) 319.132
CNS0095604Slightly white alabastrum(tetraploid) 114.029
CNS0095605Slightly white alabastrum(tetraploid) 213.324
CNS0095606Slightly white alabastrum(tetraploid) 38.750
CNS0095607Whole white alabastrum(tetraploid) 115.320
CNS0095608Whole white alabastrum(tetraploid) 212.990
CNS0095609Whole white alabastrum(tetraploid) 314.238
CNS0095610Silvery flower (tetraploid) 113.512
CNS0095611Silvery flower (tetraploid) 29.281
CNS0095612Silvery flower (tetraploid) 315.344
CNS0095613Golden flower (tetraploid) 18.345
CNS0095614Golden flower (tetraploid) 212.490
CNS0095615Golden flower (tetraploid) 316.810
CRA001975CRR073297Stem 114.922
CRR073298Stem 211.569
CRR073299Stem 37.726
CRR073300Leaf 113.199
CRR073301Leaf 212.991
CRR073302Leaf 37.504
CRR073303Juvenile bud 16.836
CRR073304Juvenile bud 28.219
CRR073305Juvenile bud 38.788
CRR073306Third green 17.277
CRR073307Third green 25.169
CRR073308Third green 38.551
CRR073309Second white 16.797
CRR073310Second white 29.596
CRR073311Second white 312.037
CRR073312Silver flowering 111.307
CRR073313Silver flowering 212.032
CRR073314Silver flowering 313.053
CRR073315Gold flowering 17.245
CRR073316Gold flowering 212.200
CRR073317Gold flowering 35.502
CRR073318Tawny withering 110.382
CRR073319Tawny withering 212.048
CRR073320Tawny withering 312.911