Detail information of GWHGAAZE006843


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010098566.10ADP-ribosylation factor GTPase-activating protein AGD12 [Morus notabilis]
Swissprottr|Q9FVJ3|AGD12_ARATH0ADP-ribosylation factor GTPase-activating protein AGD12
trEMBLtr|W9R7K6|W9R7K6_9ROSA0ADP-ribosylation factor GTPase-activating protein AGD12 {ECO:0000313|EMBL:EXB75226.1}
TAIR10AT4G21160.45E-144Calcium-dependent ARF-type GTPase activating protein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3300892733014645-
GWHAAZE00000002mRNA3300892733014645-
GWHAAZE00000002exon3301459033014645-
GWHAAZE00000002exon3301422533014300-
GWHAAZE00000002exon3301340933013572-
GWHAAZE00000002exon3301289133013029-
GWHAAZE00000002exon3301111033011226-
GWHAAZE00000002exon3301080133010896-
GWHAAZE00000002exon3300892733009208-
GWHAAZE00000002CDS3301459033014645-
GWHAAZE00000002CDS3301422533014300-
GWHAAZE00000002CDS3301340933013572-
GWHAAZE00000002CDS3301289133013029-
GWHAAZE00000002CDS3301111033011226-
GWHAAZE00000002CDS3301080133010896-
GWHAAZE00000002CDS3300892733009208-
Transcript Sequence

Network for GWHGAAZE006843

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01412.19ArfGap31091.70E-37
PF00168.31C21532431.40E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12486SMAP Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005096molecular_functionGTPase activator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.427
SRR3591706second leaf9.511
SRR3591707mature leaf16.496
SRR3591708Shoot apex11.088
SRR3591709Stem26.422
SRR3591710White floral bud27.568
SRR3591711White flower32.394
SRR3591712Green floral bud23.755
SRR3591713Yellow flower37.461
SRP173429 SRR8316895Juvenile bud stage 11.080
SRR8316896Juvenile bud stage 17.545
SRR8316897Juvenile bud stage 9.740
SRR8316894Third green stage 6.925
SRR8316900Third green stage 20.712
SRR8316901Third green stage 21.400
SRR8316898Complete white stage 11.405
SRR8316899Complete white stage 25.233
SRR8316903Complete white stage 18.227
SRR8316902Silver flowering stage15.434
SRR8316904Silver flowering stage16.378
SRR8316905Silver flowering stage9.703
SRR8316906Gold flowering stage 33.512
SRR8316907Gold flowering stage 28.936
SRR8316908Gold flowering stage 39.021
SRP132670SRR6706286Control14.575
SRR6706287Light intensity 50%17.205
SRR6706288Light intensity 20%16.720
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.984
CNS0095593Slightly white alabastrum(diploid) 216.094
CNS0095594Slightly white alabastrum(diploid) 315.124
CNS0095595Whole white alabastrum(diploid) 218.061
CNS0095596Whole white alabastrum(diploid) 319.228
CNS0095597Whole white alabastrum(diploid) 420.879
CNS0095598Silvery flower (diploied) 115.763
CNS0095599Silvery flower (diploied) 217.468
CNS0095600Silvery flower (diploied) 324.822
CNS0095601Golden flower (diploid) 117.046
CNS0095602Golden flower (diploid) 222.929
CNS0095603Golden flower (diploid) 321.081
CNS0095604Slightly white alabastrum(tetraploid) 119.983
CNS0095605Slightly white alabastrum(tetraploid) 219.781
CNS0095606Slightly white alabastrum(tetraploid) 316.818
CNS0095607Whole white alabastrum(tetraploid) 125.757
CNS0095608Whole white alabastrum(tetraploid) 226.400
CNS0095609Whole white alabastrum(tetraploid) 319.820
CNS0095610Silvery flower (tetraploid) 134.079
CNS0095611Silvery flower (tetraploid) 227.441
CNS0095612Silvery flower (tetraploid) 320.539
CNS0095613Golden flower (tetraploid) 123.418
CNS0095614Golden flower (tetraploid) 228.288
CNS0095615Golden flower (tetraploid) 335.088
CRA001975CRR073297Stem 112.197
CRR073298Stem 210.095
CRR073299Stem 36.458
CRR073300Leaf 114.469
CRR073301Leaf 211.544
CRR073302Leaf 310.286
CRR073303Juvenile bud 114.521
CRR073304Juvenile bud 29.826
CRR073305Juvenile bud 38.149
CRR073306Third green 114.668
CRR073307Third green 216.157
CRR073308Third green 313.537
CRR073309Second white 113.090
CRR073310Second white 218.569
CRR073311Second white 315.699
CRR073312Silver flowering 18.753
CRR073313Silver flowering 26.306
CRR073314Silver flowering 36.565
CRR073315Gold flowering 18.702
CRR073316Gold flowering 27.466
CRR073317Gold flowering 33.759
CRR073318Tawny withering 17.594
CRR073319Tawny withering 29.683
CRR073320Tawny withering 39.259