Gene detail

Detail information of GWHGAAZE006836

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010247824.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Nelumbo nucifera]
Swissprot	tr\|C0LGQ9\|Y4294_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g20940
trEMBL	tr\|A0A068V9W3\|A0A068V9W3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_153 {ECO:0000313\|EMBL:CDP17294.1}
TAIR10	AT4G20940.1	2E-156	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32925372	32928696	-
GWHAAZE00000002	mRNA	32925372	32928696	-
GWHAAZE00000002	exon	32927517	32928696	-
GWHAAZE00000002	exon	32925372	32925820	-
GWHAAZE00000002	CDS	32927517	32928696	-
GWHAAZE00000002	CDS	32925372	32925820	-

Transcript Sequence
>GWHTAAZE006844 ATGCCCACACTGCAACAACTTCACCTTGAGAACAATATGCTTGTTGGAAGTATTGAGTTCTCTTCACCTTCATCTTCCTCCAAAGAATCAAATCTTCGCATTCTTGATCTTTCTAATAACCATCTGAACGGTTATTTTCCTGATGGATTTGATTCCTTGACGGGACTTAATGTGCTCCGGCTTGCGGGGAATAATTTCTCCGGTTCTCTCCCGACATCCATGGGTGACATTAGCTCTCTAAGTTCTTTAGATATCTCACAAAATCATTTCACTGGTCCGTTGCCCAATAACTTGCCAAACACTCTGGAAAGCTTTAACGCTTCTTATAATGGTCTCTCTGGGGTCGTCCCGGAAAATTTGAGAAAATTTCCACCCTCTTCTTTTTACCCTGGAAATTCTGCTTTACAGTTTCCAAACCCTCCTCCTGGAACAAATCCGGGTCCCAACGGAAATCCCAAGAGGAAACCAATCAAAACAGTCATAAAAATCGTAGTGATAATAGCTTGTGTGATCGCCGTTGTAATTCTAATCCTCCTTGCCATTTTCATCCACTATATCCGCATATCAAGGCGACCTCTTCCACAACATGTGACAAACAAAGACGTCCGCCAACGGGCCCCACCGAACCCTAGCAGTGGAAGAGAGAGTGGCAGCGGTGGCCTCATAGTTTCTGCTGAGGATCTTGTGGCTTCAAGAAAAGGATCTTCATCAGAGATAATTAGCCCCGATGAAAAAACAGCGGCTATAACGGGGTTTTCACCATCGAAGAACAGTCATTTTTCTTGGTCACCAGGGTCTGGTGATTCATATACAGCTGATCTTTCTAGATTGGACGTTAGGTCACCAGATCGATTGGCAGGCGAGTTGTACTTTCTTGATGATACAATCTCGTTCACACCTGAGGAGCTTTCGAGGGCCCCGGCTGAGGTATTGGGGAGGAGTAGCCATGGGACTTCCTACAGGGCAACGCTGGATAACGGACTTTTCTTGACTGTTAAGTGGTTGAGAGAGGGAGTGGCGAAACAGAGGAAGGATTTTGCTAAGGAGGCTAAAAAGTTTGCGAATATTAGACACCCGAATGTGGTGGGGTTAAGAGGGTACTACTGGGGTCCCACACAACATGAGAAGCTCATACTTTCAGATTATATATCTCTGGGGAGTCTCGCAAGCTTTCTATATGGCTTCAAGATAGCTGTAGATGTTGCACGTGGCCTGAACTATCTCCATTTCGACCGAGCCGTTCCACATGGTAATCTCAAAGCAACCAACATACTCCTAGACGGGCCAGACCTCAATGCTCGAGTGGCAGACTATTGCCTCCATCGGCTCATGACCCAAGCTGGAACCATTGAACAGATTCTTGATGCCGGTGTATTAGGCTATCGTGCACCGGAACTGGCCGCCTCCAAGAAGCCTCTCCCCTCCTTCAAATCCGATGTTTATGCCTTTGGGGTGATAATGTTGGAGCTTCTCACTGGAAAGTGTGCCGGAGATGTGGTATCTGGTGAGGATGGTGGGGTTGACTTGACAGATTGGGTGAGGTTGAGGGTGACCGGAGGTGGTGGACCGGATTCTTTTGATGCTGTTTTATTGCCGGAAATGGGGAATCCGCAAGTGAGAAGGGGATGA

Network for GWHGAAZE006836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	30	90	1.50E-09
PF07714.18	PK_Tyr_Ser-Thr	309	493	3.20E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.051
	SRR3591706	second leaf	12.737
	SRR3591707	mature leaf	0.983
	SRR3591708	Shoot apex	25.238
	SRR3591709	Stem	5.963
	SRR3591710	White floral bud	5.836
	SRR3591711	White flower	3.657
	SRR3591712	Green floral bud	19.854
	SRR3591713	Yellow flower	0.085
SRP173429	SRR8316895	Juvenile bud stage	10.218
	SRR8316896	Juvenile bud stage	10.257
	SRR8316897	Juvenile bud stage	4.567
	SRR8316894	Third green stage	5.332
	SRR8316900	Third green stage	19.432
	SRR8316901	Third green stage	16.603
	SRR8316898	Complete white stage	1.750
	SRR8316899	Complete white stage	21.856
	SRR8316903	Complete white stage	3.958
	SRR8316902	Silver flowering stage	0.150
	SRR8316904	Silver flowering stage	0.306
	SRR8316905	Silver flowering stage	0.220
	SRR8316906	Gold flowering stage	0.112
	SRR8316907	Gold flowering stage	0.040
	SRR8316908	Gold flowering stage	0.260
SRP132670	SRR6706286	Control	14.570
	SRR6706287	Light intensity 50%	18.444
	SRR6706288	Light intensity 20%	21.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.804
	CNS0095593	Slightly white alabastrum(diploid) 2	10.144
	CNS0095594	Slightly white alabastrum(diploid) 3	6.892
	CNS0095595	Whole white alabastrum(diploid) 2	8.928
	CNS0095596	Whole white alabastrum(diploid) 3	6.065
	CNS0095597	Whole white alabastrum(diploid) 4	8.246
	CNS0095598	Silvery flower (diploied) 1	7.215
	CNS0095599	Silvery flower (diploied) 2	7.083
	CNS0095600	Silvery flower (diploied) 3	3.175
	CNS0095601	Golden flower (diploid) 1	6.319
	CNS0095602	Golden flower (diploid) 2	3.131
	CNS0095603	Golden flower (diploid) 3	2.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.604
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.960
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.386
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.894
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.553
	CNS0095610	Silvery flower (tetraploid) 1	0.695
	CNS0095611	Silvery flower (tetraploid) 2	2.316
	CNS0095612	Silvery flower (tetraploid) 3	1.424
	CNS0095613	Golden flower (tetraploid) 1	0.079
	CNS0095614	Golden flower (tetraploid) 2	0.394
	CNS0095615	Golden flower (tetraploid) 3	0.049
CRA001975	CRR073297	Stem 1	20.455
	CRR073298	Stem 2	18.015
	CRR073299	Stem 3	24.165
	CRR073300	Leaf 1	31.114
	CRR073301	Leaf 2	25.970
	CRR073302	Leaf 3	26.398
	CRR073303	Juvenile bud 1	34.195
	CRR073304	Juvenile bud 2	38.361
	CRR073305	Juvenile bud 3	40.485
	CRR073306	Third green 1	2.055
	CRR073307	Third green 2	1.415
	CRR073308	Third green 3	1.162
	CRR073309	Second white 1	0.199
	CRR073310	Second white 2	0.301
	CRR073311	Second white 3	0.435
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.072
	CRR073314	Silver flowering 3	0.216
	CRR073315	Gold flowering 1	3.459
	CRR073316	Gold flowering 2	3.359
	CRR073317	Gold flowering 3	3.099
	CRR073318	Tawny withering 1	14.957
	CRR073319	Tawny withering 2	9.898
	CRR073320	Tawny withering 3	15.682