Gene detail

Detail information of GWHGAAZE006833

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008459517.1	0	PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Cucumis melo]
Swissprot	tr\|A9LNK9\|CPSF_ARATH	0	30-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|B9GJF6\|B9GJF6_POPTR	0	Zinc finger family protein {ECO:0000313\|EMBL:EEE85138.2}
TAIR10	AT1G30460.1	2E-140	cleavage and polyadenylation specificity factor 30

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32851958	32866105	+
GWHAAZE00000002	mRNA	32851958	32866105	+
GWHAAZE00000002	exon	32851958	32852343	+
GWHAAZE00000002	exon	32856466	32856865	+
GWHAAZE00000002	exon	32857145	32857241	+
GWHAAZE00000002	exon	32857348	32857402	+
GWHAAZE00000002	exon	32862599	32862761	+
GWHAAZE00000002	exon	32862952	32863062	+
GWHAAZE00000002	exon	32864078	32864146	+
GWHAAZE00000002	exon	32864419	32864505	+
GWHAAZE00000002	exon	32865282	32865368	+
GWHAAZE00000002	exon	32865438	32865731	+
GWHAAZE00000002	exon	32865872	32866105	+
GWHAAZE00000002	CDS	32851958	32852343	+
GWHAAZE00000002	CDS	32856466	32856865	+
GWHAAZE00000002	CDS	32857145	32857241	+
GWHAAZE00000002	CDS	32857348	32857402	+
GWHAAZE00000002	CDS	32862599	32862761	+
GWHAAZE00000002	CDS	32862952	32863062	+
GWHAAZE00000002	CDS	32864078	32864146	+
GWHAAZE00000002	CDS	32864419	32864505	+
GWHAAZE00000002	CDS	32865282	32865368	+
GWHAAZE00000002	CDS	32865438	32865731	+
GWHAAZE00000002	CDS	32865872	32866105	+

Transcript Sequence
>GWHTAAZE006841 ATGGATGATGGTGAAGGAGGTCTAAGCTTCGACTTCGAAGGCGGCCTCGAGACGGGGCCCACCCAGCCCACCGCATCGGTACCAGTGATCCAATCGGAGAATGCGAATCCATCGGCGGCTAATGCAAACAACAATAACAACTCCTCCGCGCCGGCGGCAGCCGATCTGGCGCCGGGAGGGAATTTCCAGGGGCGGCGGAGCTACCGGCAAACGGTGTGCCGGCACTGGCTCCGGAGCCTCTGTATGAAGGGAGAGGCCTGTGGATTCCTCCACCAGTACGATAAGTCTCGAATGCCGATTTGTCGGTTCTTTCGGTTATATGGAGAGTGTAGGGAGCAGGATTGTGTTTACAAGCACACTAATGAAGATATCAAAGAGTGTAACATGTACAAGTTAGGGTTCTGTCCAAATGGTTCTGATTGTCGGTATAGGCATGCCAAGGTGGCTGGACCTCCACCTCCGGTAGAAGAAGTTCTGCAGAAGATTCAACATTTGACTTCCTACAATTATGGCAACTCAAACAGGTTTTTCCAAAACCGGAATGCGAATTATTCTCAACAACAAACAGACAGATCTGCCTTTCCACAGATCCCCAATGGTGTCACTCAAGTTATAAAACCTACAACAACAGAGCCTCCTAATGTGCAACAACCACAAGTTCAACAGTCCCAAGAACAGGTCAACCAGGCCCAATCACAAAATCTTCCCAACGGCGATCAAAATCAAGCAAGTAGAACTGCAATACCCCTCCCTCAAGGAATATCTAGGTTTGTTCGGAGTACTAAGGACAAATTTAGGGACATTGATATGTCTAAAGAATTGTACGAGTTAAGGAACGATGCTAAAGTTGACATTGAAGCTAATTATCTGGATATTAGGGCTTATGAGTATTTTGATTTTGAGGTCCAAATGTCCATCTCTAGTGAGGATATGGATGAGTATTTTATTGTCAAAAGTTGCAACCGTGAGAATTTGGAATTATCGGTACAACAAGGAGTATGGGCTACTCAAAGAAGCAATGAGGCTAAACTGAATGAAGCTTTTGATTCCGTAGAAAATGTTATATTGATCTTTTCAGTCAACCGCACCCAACATTTTCAGGGTTGTGCAAAGATGACATCCAAAATTGGTGGCTCTGTTGGTGGGGGGAATTGGAAGTACGGACATGGAACTGCACATTATGGGAGGAACTTCTCTGTCAAATGGCTAAAGCTATGTGAACTGTCCTTTTACAAGTCTCGGCACTTGAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGCAGAGATTGCCAAGAGCTAGAGCCCTCTATTGGTGAGCAGTTGGCTTTGCTGCTCTACACTGAACCAGACAGTGAACTTATGGCAATCTCACTTGCAGCAGAATCGAAGCGCGAGGAGGAAAAGGCAAAGGGACTTGCACCTGAAAATGGGTCTGAAAACCCAGATATCGGATTCAATACAGCAGCTCAAGGAAGAGGAAGGGGCAGAGGAGGAATGATGATGTGGCCTCCTCAGGCTCCTTTCCCCCGTGGACCCAGGCCTCTCCCGGGAATGCGTGCCCTCTCACCTGGCATGATGGGCTCTGATGGATTTTCTTACGGTGGACCTCACATGCCCGATCTTTTCAACATGGGCCCACGTGGCTTTCCCCCTTATGGCCCACGTTTTCCTGGGGATTTTGCGGGTCCCGGACCAAACATGATGTTTCATGGCCGCCCGTCACTGCCGGAAACTTCCCAGGCGGGACTAGGCAATGAGATTACAAGCTCGGGCAGTGGACCTCATGATGAGGGGCAGTATCAGCAGAGAGCGAAGGGTCAACAAGAGGAGCGATTTAGTGCTCGCAGCAGCAGCATCAGAAATGATGGGAGTGAGAGCGAGGATGAGGCGCCAAGACGGTCAAGACACGGGGAAGGAAAGAAACAGAAGCGTGGTGAGGAGGCGGATGATACCAATGACGATGATCAAAGGCTCTGA

Network for GWHGAAZE006833

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04146.16	YTH	313	374	1.80E-25
PF04146.16	YTH	391	444	1.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
K14404	CPSF4, YTH1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.518
	SRR3591706	second leaf	10.624
	SRR3591707	mature leaf	8.627
	SRR3591708	Shoot apex	17.477
	SRR3591709	Stem	12.615
	SRR3591710	White floral bud	14.040
	SRR3591711	White flower	19.278
	SRR3591712	Green floral bud	18.803
	SRR3591713	Yellow flower	13.162
SRP173429	SRR8316895	Juvenile bud stage	9.049
	SRR8316896	Juvenile bud stage	10.795
	SRR8316897	Juvenile bud stage	6.278
	SRR8316894	Third green stage	5.196
	SRR8316900	Third green stage	13.009
	SRR8316901	Third green stage	14.002
	SRR8316898	Complete white stage	3.704
	SRR8316899	Complete white stage	18.365
	SRR8316903	Complete white stage	7.838
	SRR8316902	Silver flowering stage	5.263
	SRR8316904	Silver flowering stage	6.827
	SRR8316905	Silver flowering stage	2.722
	SRR8316906	Gold flowering stage	12.630
	SRR8316907	Gold flowering stage	12.094
	SRR8316908	Gold flowering stage	13.779
SRP132670	SRR6706286	Control	22.655
	SRR6706287	Light intensity 50%	22.039
	SRR6706288	Light intensity 20%	21.387
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.317
	CNS0095593	Slightly white alabastrum(diploid) 2	10.077
	CNS0095594	Slightly white alabastrum(diploid) 3	8.900
	CNS0095595	Whole white alabastrum(diploid) 2	10.006
	CNS0095596	Whole white alabastrum(diploid) 3	8.934
	CNS0095597	Whole white alabastrum(diploid) 4	8.507
	CNS0095598	Silvery flower (diploied) 1	10.291
	CNS0095599	Silvery flower (diploied) 2	10.948
	CNS0095600	Silvery flower (diploied) 3	15.128
	CNS0095601	Golden flower (diploid) 1	9.950
	CNS0095602	Golden flower (diploid) 2	14.068
	CNS0095603	Golden flower (diploid) 3	16.102
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.316
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.021
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.315
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.483
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.225
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.473
	CNS0095610	Silvery flower (tetraploid) 1	16.355
	CNS0095611	Silvery flower (tetraploid) 2	16.793
	CNS0095612	Silvery flower (tetraploid) 3	15.744
	CNS0095613	Golden flower (tetraploid) 1	8.917
	CNS0095614	Golden flower (tetraploid) 2	12.611
	CNS0095615	Golden flower (tetraploid) 3	14.951
CRA001975	CRR073297	Stem 1	20.560
	CRR073298	Stem 2	19.800
	CRR073299	Stem 3	21.609
	CRR073300	Leaf 1	21.069
	CRR073301	Leaf 2	18.818
	CRR073302	Leaf 3	16.447
	CRR073303	Juvenile bud 1	17.485
	CRR073304	Juvenile bud 2	16.303
	CRR073305	Juvenile bud 3	22.746
	CRR073306	Third green 1	7.816
	CRR073307	Third green 2	8.797
	CRR073308	Third green 3	8.679
	CRR073309	Second white 1	8.314
	CRR073310	Second white 2	8.932
	CRR073311	Second white 3	8.721
	CRR073312	Silver flowering 1	9.041
	CRR073313	Silver flowering 2	7.291
	CRR073314	Silver flowering 3	7.916
	CRR073315	Gold flowering 1	10.889
	CRR073316	Gold flowering 2	14.699
	CRR073317	Gold flowering 3	11.154
	CRR073318	Tawny withering 1	13.293
	CRR073319	Tawny withering 2	10.746
	CRR073320	Tawny withering 3	13.452