Gene detail

Detail information of GWHGAAZE006799

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010655433.1	PREDICTED: CBL-interacting protein kinase 04 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q93VD3\|CIPKN_ARATH	CBL-interacting serine/threonine-protein kinase 23
trEMBL	tr\|D7TKB8\|D7TKB8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30940.3}
TAIR10	AT1G30270.1	CBL-interacting protein kinase 23

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32216776	32225531	+
GWHAAZE00000002	mRNA	32216776	32225531	+
GWHAAZE00000002	exon	32216776	32217126	+
GWHAAZE00000002	exon	32218103	32218165	+
GWHAAZE00000002	exon	32218355	32218426	+
GWHAAZE00000002	exon	32218529	32218636	+
GWHAAZE00000002	exon	32218775	32218855	+
GWHAAZE00000002	exon	32219011	32219064	+
GWHAAZE00000002	exon	32219150	32219275	+
GWHAAZE00000002	exon	32220563	32220652	+
GWHAAZE00000002	exon	32220813	32220932	+
GWHAAZE00000002	exon	32221025	32221150	+
GWHAAZE00000002	exon	32221894	32222010	+
GWHAAZE00000002	exon	32222423	32222479	+
GWHAAZE00000002	exon	32222598	32222672	+
GWHAAZE00000002	exon	32223348	32223426	+
GWHAAZE00000002	exon	32225236	32225531	+
GWHAAZE00000002	five_prime_UTR	32216776	32216946	+
GWHAAZE00000002	CDS	32216947	32217126	+
GWHAAZE00000002	CDS	32218103	32218165	+
GWHAAZE00000002	CDS	32218355	32218426	+
GWHAAZE00000002	CDS	32218529	32218636	+
GWHAAZE00000002	CDS	32218775	32218855	+
GWHAAZE00000002	CDS	32219011	32219064	+
GWHAAZE00000002	CDS	32219150	32219275	+
GWHAAZE00000002	CDS	32220563	32220652	+
GWHAAZE00000002	CDS	32220813	32220932	+
GWHAAZE00000002	CDS	32221025	32221150	+
GWHAAZE00000002	CDS	32221894	32222010	+
GWHAAZE00000002	CDS	32222423	32222479	+
GWHAAZE00000002	CDS	32222598	32222672	+
GWHAAZE00000002	CDS	32223348	32223419	+
GWHAAZE00000002	three_prime_UTR	32223420	32223426	+
GWHAAZE00000002	three_prime_UTR	32225236	32225531	+

Transcript Sequence
>GWHTAAZE006807 GCAAGAAGAAGAGATCTTAGAATTCAACTTTTCCATATATGGATGGTATATCTTCGAGGCCTTGAATTTGCTTTAACGAGAAACCATGGATGGTATCTGTATCTGAAGTCTTAGGTGAGGGAGAGAAAAATTGAGAGAGATCGTTCTGATACAATACTGGTATATAAAGATATGGCTTCCAGAGCGAGCGGGAGCGGGAAGACGAGAGTGGGGAAATATGAGCTTGGACGAACCCTAGGAGAAGGATCCTTTGCGAAAGTGAAGTTTGCGAGGAACACGGAGACCGGTCAAAATGTTGCTATAAAGGTTATTGATAAGGAGAAACTTCTCAAGCACAAGATGATCGGTCAGATTAAACGTGAAATTTCAACAATGAAATTAATCAGGCATCCCAATGTCATTCGTATGTATGAGGTTATGGCAAGCAAGACAAAGATATATATCGTTTTGGAATTTGTTACTGGTGGTGAACTCTTTGACAAAATTGCTTCTAAAGGTAGGCTGAAAGAAGACGAAGCAAGAAGGTATTTTCAGCAGCTCGTTAATGCAGTGGATTACTGTCACAGCCGAGGCGTTTTCCACAGAGATCTCAAGCCAGAGAATCTGCTCCTTGATGCAACTGGAGTTCTTAAAGTCTCAGATTTTGGATTGAGTGCTCTACCTCAGCAAGTTCGAGAAGATGGGTTACTGCACACAACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTGATCAATAACAAGGGTTACGATGGAGCAAAGGCAGACCTTTGGTCGTGTGGTGTAATACTTTTTGTCCTTATGGCCGGCTTTTTGCCTTTTGAAGAATCCAACCTCATGGCATTATACAAAAAGATATTCAAGGCAGACTTCACTTGCCCTCCCTGGTTTTCCACGAGTGCAAAGAAATTGATCAAAAGAATCCTGGACCCTAATCCCGTAACACGCATCACGATTGCTGAGCTCATTGAGAACGATTGGTTTAAGAAAGGGTATCAGCCACCTAGTTTCGAACAAGAAGATGTTAGCCTTGATGACGTTGATGCTGTTTTTACTGAATCAGGGGATGCTTCAAACCTTGTAGTGGAGAGGCGGGAAGAACAATCTGCGGCCCCTGTCGCTATGAATGCTTTTGAGCTTATCTCTAAATCTCAAGGTCTCAACCTCGGTTCTCTTTTCGAAAAACAAATGGGGCTTGTTAAACGAGAAACAAGATTTACGTCCAAACATTCTGCCAATGAGATAATCTCAAGAATCGAGGAAGCTGCTACTCCTTTGGGGTTTGATGTCACAAAAAATAACTACAAGATGAAGCTTCACGGAGAGAAGACTGGACGTAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAGGTGGCTCCCTCACTTCACATTGTTGAGGTTCGCAAGAATGGAGGTGATACCCTAGAATTTCACAAGTTCTACAAGACCTTATCGATTGGGTTGAAAGATATTGTGTGGAAATCAGCAGATGAAGTAAAAGAGGAATGAAATAATGGTACAGTCCTACCTTGATTGCTTTCTTCATGGTGTTTGCTTCTGGGGTTTAAATAACGTCAGATCAGTTCTCTGAGAATTGTATATCTGAGGTTGCTGGATTGTATCTTGAATTGATATGTATATAGACATTTACTTTGTGTGTGTGTTGAAATTGTGAATTTTTGTTTTTGTTTAATTGGTTGAATTGAATGATACCCGGGCAACATTGCATCTTAGATGTCAATGTGTTCGGAACAATGCTGTTCTATCAGTTGGATTTCTGGTTTATAATTAGATGGTCTTGTTTGAATTACA

Network for GWHGAAZE006799

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	16	271	1.10E-74
PF03822.15	NAF	315	375	7.60E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.716
	SRR3591706	second leaf	13.944
	SRR3591707	mature leaf	23.839
	SRR3591708	Shoot apex	16.131
	SRR3591709	Stem	68.532
	SRR3591710	White floral bud	29.200
	SRR3591711	White flower	32.711
	SRR3591712	Green floral bud	18.813
	SRR3591713	Yellow flower	25.306
SRP173429	SRR8316895	Juvenile bud stage	14.008
	SRR8316896	Juvenile bud stage	25.265
	SRR8316897	Juvenile bud stage	10.678
	SRR8316894	Third green stage	13.978
	SRR8316900	Third green stage	26.090
	SRR8316901	Third green stage	28.495
	SRR8316898	Complete white stage	20.455
	SRR8316899	Complete white stage	55.761
	SRR8316903	Complete white stage	38.430
	SRR8316902	Silver flowering stage	29.994
	SRR8316904	Silver flowering stage	48.320
	SRR8316905	Silver flowering stage	20.306
	SRR8316906	Gold flowering stage	49.593
	SRR8316907	Gold flowering stage	62.600
	SRR8316908	Gold flowering stage	65.182
SRP132670	SRR6706286	Control	25.231
	SRR6706287	Light intensity 50%	24.416
	SRR6706288	Light intensity 20%	26.411
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.031
	CNS0095593	Slightly white alabastrum(diploid) 2	19.736
	CNS0095594	Slightly white alabastrum(diploid) 3	20.383
	CNS0095595	Whole white alabastrum(diploid) 2	16.611
	CNS0095596	Whole white alabastrum(diploid) 3	16.634
	CNS0095597	Whole white alabastrum(diploid) 4	18.178
	CNS0095598	Silvery flower (diploied) 1	29.743
	CNS0095599	Silvery flower (diploied) 2	26.472
	CNS0095600	Silvery flower (diploied) 3	59.994
	CNS0095601	Golden flower (diploid) 1	21.672
	CNS0095602	Golden flower (diploid) 2	44.407
	CNS0095603	Golden flower (diploid) 3	41.995
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.832
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.428
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.382
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.766
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.328
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.753
	CNS0095610	Silvery flower (tetraploid) 1	49.699
	CNS0095611	Silvery flower (tetraploid) 2	29.459
	CNS0095612	Silvery flower (tetraploid) 3	23.676
	CNS0095613	Golden flower (tetraploid) 1	35.780
	CNS0095614	Golden flower (tetraploid) 2	42.196
	CNS0095615	Golden flower (tetraploid) 3	23.949
CRA001975	CRR073297	Stem 1	17.597
	CRR073298	Stem 2	17.607
	CRR073299	Stem 3	15.902
	CRR073300	Leaf 1	20.550
	CRR073301	Leaf 2	18.098
	CRR073302	Leaf 3	17.716
	CRR073303	Juvenile bud 1	19.399
	CRR073304	Juvenile bud 2	15.177
	CRR073305	Juvenile bud 3	16.057
	CRR073306	Third green 1	11.132
	CRR073307	Third green 2	16.084
	CRR073308	Third green 3	14.479
	CRR073309	Second white 1	8.511
	CRR073310	Second white 2	12.649
	CRR073311	Second white 3	9.659
	CRR073312	Silver flowering 1	6.056
	CRR073313	Silver flowering 2	3.140
	CRR073314	Silver flowering 3	4.861
	CRR073315	Gold flowering 1	16.669
	CRR073316	Gold flowering 2	25.790
	CRR073317	Gold flowering 3	11.944
	CRR073318	Tawny withering 1	23.418
	CRR073319	Tawny withering 2	22.716
	CRR073320	Tawny withering 3	16.448