Gene detail

Detail information of GWHGAAZE006781

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI30713.3	3.7253E-180	unnamed protein product [Vitis vinifera]
trEMBL	tr\|F6HMB2\|F6HMB2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55700.1}
TAIR10	AT5G45760.1	8E-120	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	31877183	31881952	+
GWHAAZE00000002	mRNA	31877183	31881952	+
GWHAAZE00000002	exon	31877183	31877278	+
GWHAAZE00000002	exon	31877451	31877553	+
GWHAAZE00000002	exon	31878418	31878479	+
GWHAAZE00000002	exon	31878920	31878976	+
GWHAAZE00000002	exon	31879240	31879299	+
GWHAAZE00000002	exon	31879699	31879741	+
GWHAAZE00000002	exon	31880133	31880210	+
GWHAAZE00000002	exon	31880640	31880946	+
GWHAAZE00000002	exon	31881636	31881789	+
GWHAAZE00000002	exon	31881863	31881952	+
GWHAAZE00000002	CDS	31877183	31877278	+
GWHAAZE00000002	CDS	31877451	31877553	+
GWHAAZE00000002	CDS	31878418	31878479	+
GWHAAZE00000002	CDS	31878920	31878976	+
GWHAAZE00000002	CDS	31879240	31879299	+
GWHAAZE00000002	CDS	31879699	31879741	+
GWHAAZE00000002	CDS	31880133	31880210	+
GWHAAZE00000002	CDS	31880640	31880946	+
GWHAAZE00000002	CDS	31881636	31881789	+
GWHAAZE00000002	CDS	31881863	31881952	+

Transcript Sequence
>GWHTAAZE006789 ATGACAGAACCAAGACGACTGAAAGGTCATAAGGCCACGGTCACCTGCTGCATCGCGGCCGTTGACCGCCCTGGTCTTGTTGCCACTTCCGGCGAGGATGGTTGTGTTTGCTGGTTTGATATGAGGTGTAAAGATGCCATATCTGTCATGAGTATTTGGGAAAATGATAATCCAATTTCATCACTATGTTTTAAGCCAGGGAATGAAGATATTATTTATGTTTCCTCGGGAAGTGAAGTCAAGGGTTTTGATGTGCATATGGCTGCCTCGTGGAAGCCATTAGAAAGTTACAAATATAATAAAGAGGAGATAAATCAGATTGTTTGCAGTTCAAAGTCGACTTTTCTTGCTGCTGCTGATGATAGTGGTGATATTAAGATTTGTAGCAGTGTACAGTTCCTTCCTTGGAGACCCTGGGAAGTCATTACTGGAGGTCTTGATTCAAAGCTTGTGATGTGGGACTTCTCCAAAGGACGCCCAAACAAAATATTGGACTTCGGTGCGGAAGCTTGCAGTGACGGAGGACAATCCTTGAACCCTGCTTTTGTACATGCGGTGGCAGTTCCTGAAGTTGATATGTTAGACAGAACAGACCGAATTTGTGTTGTGGCAAGGGGTGATGGTATTGTTGATGTAATAAATATTGAATCAGAACTCGCTGAGACTAAATCCAGAAGTAAAGGCACTCAATCAAGGTCGAAAGCCCGTACTCTGTCTCCAAATTCCGAAGTCTCCACTCAGAATGGAACAAAGAAGTTGCATTTGGACTACTCTTTTGGAGGGCATACTGCTGCTGTATCATGCGTGGCATTTTCGAAGTTTGGGGAGAAAGGGAAGTACATAATATCTGGTGGAAATGATAAATCAGTAAAAGCTTGGGATTGGTCTAGACATTTTGAAGCTGGTGAAACTAGCAGCAACAGCAACCTTCTACATTTGAACATCAATTTGAGCAAGAAAGTCAATTGGCTCTGCACCACTACAAATGACTCAGAAAATCTCGTAGTCTGTGATACATCCAAAGTAGTGAAGGTTTATACTGTCATGTAG

Network for GWHGAAZE006781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	257	294	0.00014

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.037
	SRR3591706	second leaf	17.851
	SRR3591707	mature leaf	15.752
	SRR3591708	Shoot apex	33.159
	SRR3591709	Stem	36.422
	SRR3591710	White floral bud	18.132
	SRR3591711	White flower	18.803
	SRR3591712	Green floral bud	25.574
	SRR3591713	Yellow flower	18.087
SRP173429	SRR8316895	Juvenile bud stage	11.068
	SRR8316896	Juvenile bud stage	14.720
	SRR8316897	Juvenile bud stage	18.098
	SRR8316894	Third green stage	7.360
	SRR8316900	Third green stage	13.217
	SRR8316901	Third green stage	10.371
	SRR8316898	Complete white stage	3.122
	SRR8316899	Complete white stage	11.803
	SRR8316903	Complete white stage	4.284
	SRR8316902	Silver flowering stage	2.955
	SRR8316904	Silver flowering stage	4.100
	SRR8316905	Silver flowering stage	1.615
	SRR8316906	Gold flowering stage	6.133
	SRR8316907	Gold flowering stage	5.419
	SRR8316908	Gold flowering stage	13.510
SRP132670	SRR6706286	Control	11.937
	SRR6706287	Light intensity 50%	11.360
	SRR6706288	Light intensity 20%	10.892
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.567
	CNS0095593	Slightly white alabastrum(diploid) 2	12.625
	CNS0095594	Slightly white alabastrum(diploid) 3	11.740
	CNS0095595	Whole white alabastrum(diploid) 2	8.907
	CNS0095596	Whole white alabastrum(diploid) 3	8.607
	CNS0095597	Whole white alabastrum(diploid) 4	6.797
	CNS0095598	Silvery flower (diploied) 1	18.079
	CNS0095599	Silvery flower (diploied) 2	14.744
	CNS0095600	Silvery flower (diploied) 3	8.079
	CNS0095601	Golden flower (diploid) 1	17.170
	CNS0095602	Golden flower (diploid) 2	9.808
	CNS0095603	Golden flower (diploid) 3	9.115
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.228
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.576
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.484
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.014
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.899
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.936
	CNS0095610	Silvery flower (tetraploid) 1	13.279
	CNS0095611	Silvery flower (tetraploid) 2	13.851
	CNS0095612	Silvery flower (tetraploid) 3	11.495
	CNS0095613	Golden flower (tetraploid) 1	10.910
	CNS0095614	Golden flower (tetraploid) 2	13.945
	CNS0095615	Golden flower (tetraploid) 3	7.033
CRA001975	CRR073297	Stem 1	17.069
	CRR073298	Stem 2	15.309
	CRR073299	Stem 3	9.133
	CRR073300	Leaf 1	14.847
	CRR073301	Leaf 2	13.188
	CRR073302	Leaf 3	11.954
	CRR073303	Juvenile bud 1	10.879
	CRR073304	Juvenile bud 2	4.838
	CRR073305	Juvenile bud 3	7.186
	CRR073306	Third green 1	0.828
	CRR073307	Third green 2	1.265
	CRR073308	Third green 3	1.861
	CRR073309	Second white 1	0.426
	CRR073310	Second white 2	1.086
	CRR073311	Second white 3	1.030
	CRR073312	Silver flowering 1	0.577
	CRR073313	Silver flowering 2	0.466
	CRR073314	Silver flowering 3	0.621
	CRR073315	Gold flowering 1	6.202
	CRR073316	Gold flowering 2	7.349
	CRR073317	Gold flowering 3	2.903
	CRR073318	Tawny withering 1	10.450
	CRR073319	Tawny withering 2	10.824
	CRR073320	Tawny withering 3	8.157