Detail information of GWHGAAZE006776


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06028.10unnamed protein product [Coffea canephora]
Swissprottr|P38379|SC61A_PYRSA0Protein transport protein Sec61 subunit alpha
trEMBLtr|A0A068UEG9|A0A068UEG9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313|EMBL:CDP06028.1}
TAIR10AT2G34250.20SecY protein transport family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3176279131766447+
GWHAAZE00000002mRNA3176279131766447+
GWHAAZE00000002exon3176279131763134+
GWHAAZE00000002exon3176386431764091+
GWHAAZE00000002exon3176418931764543+
GWHAAZE00000002exon3176495131765075+
GWHAAZE00000002exon3176561531765750+
GWHAAZE00000002exon3176620831766447+
GWHAAZE00000002CDS3176279131763134+
GWHAAZE00000002CDS3176386431764091+
GWHAAZE00000002CDS3176418931764543+
GWHAAZE00000002CDS3176495131765075+
GWHAAZE00000002CDS3176561531765750+
GWHAAZE00000002CDS3176620831766447+
Transcript Sequence

Network for GWHGAAZE006776

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0189map03060 Protein export
map04141 Protein processing in endoplasmic reticulum
GO:0015031 protein transport GOslim:biological_process
GO:0004190 aspartic-type endopeptidase activity GOslim:molecular_function
map04918 Thyroid hormone synthesis
map04145 Phagosome


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10559.10Plug_translocon42766.30E-18
PF00344.21SecY774583.40E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10956SEC61A Protein export map03060
Protein processing in endoplasmic reticulummap04141
Phagosomemap04145

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport
GO:0016020cellular_componentmembrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf152.094
SRR3591706second leaf86.908
SRR3591707mature leaf72.335
SRR3591708Shoot apex111.246
SRR3591709Stem94.513
SRR3591710White floral bud110.468
SRR3591711White flower112.248
SRR3591712Green floral bud148.383
SRR3591713Yellow flower155.862
SRP173429 SRR8316895Juvenile bud stage 94.164
SRR8316896Juvenile bud stage 118.769
SRR8316897Juvenile bud stage 76.527
SRR8316894Third green stage 53.926
SRR8316900Third green stage 169.310
SRR8316901Third green stage 143.619
SRR8316898Complete white stage 75.145
SRR8316899Complete white stage 179.443
SRR8316903Complete white stage 98.560
SRR8316902Silver flowering stage75.821
SRR8316904Silver flowering stage101.197
SRR8316905Silver flowering stage47.123
SRR8316906Gold flowering stage 158.185
SRR8316907Gold flowering stage 147.030
SRR8316908Gold flowering stage 169.709
SRP132670SRR6706286Control96.387
SRR6706287Light intensity 50%100.815
SRR6706288Light intensity 20%107.608
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1131.284
CNS0095593Slightly white alabastrum(diploid) 2130.798
CNS0095594Slightly white alabastrum(diploid) 3118.593
CNS0095595Whole white alabastrum(diploid) 2110.786
CNS0095596Whole white alabastrum(diploid) 3113.334
CNS0095597Whole white alabastrum(diploid) 494.008
CNS0095598Silvery flower (diploied) 1109.827
CNS0095599Silvery flower (diploied) 289.583
CNS0095600Silvery flower (diploied) 3160.768
CNS0095601Golden flower (diploid) 178.631
CNS0095602Golden flower (diploid) 2202.786
CNS0095603Golden flower (diploid) 3190.029
CNS0095604Slightly white alabastrum(tetraploid) 1131.663
CNS0095605Slightly white alabastrum(tetraploid) 2119.933
CNS0095606Slightly white alabastrum(tetraploid) 3177.802
CNS0095607Whole white alabastrum(tetraploid) 186.100
CNS0095608Whole white alabastrum(tetraploid) 268.820
CNS0095609Whole white alabastrum(tetraploid) 3159.331
CNS0095610Silvery flower (tetraploid) 1141.693
CNS0095611Silvery flower (tetraploid) 2117.658
CNS0095612Silvery flower (tetraploid) 3122.482
CNS0095613Golden flower (tetraploid) 175.654
CNS0095614Golden flower (tetraploid) 2128.450
CNS0095615Golden flower (tetraploid) 3161.236
CRA001975CRR073297Stem 1129.736
CRR073298Stem 2118.991
CRR073299Stem 3167.140
CRR073300Leaf 1132.372
CRR073301Leaf 2130.642
CRR073302Leaf 3180.768
CRR073303Juvenile bud 1173.809
CRR073304Juvenile bud 2175.777
CRR073305Juvenile bud 3183.107
CRR073306Third green 1107.937
CRR073307Third green 286.804
CRR073308Third green 3104.880
CRR073309Second white 1172.891
CRR073310Second white 2124.248
CRR073311Second white 3140.978
CRR073312Silver flowering 1261.199
CRR073313Silver flowering 2353.398
CRR073314Silver flowering 3317.656
CRR073315Gold flowering 166.301
CRR073316Gold flowering 276.375
CRR073317Gold flowering 387.986
CRR073318Tawny withering 1128.401
CRR073319Tawny withering 2119.097
CRR073320Tawny withering 3139.669