Gene detail

Detail information of GWHGAAZE006763

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007025271.1	2.2535E-175	Leucine-rich repeat transmembrane protein kinase [Theobroma cacao]
Swissprot	tr\|C0LGG9\|Y5344_ARATH	4E-136	Probable LRR receptor-like serine/threonine-protein kinase At1g53440 (Precursor)
trEMBL	tr\|A0A061GEP8\|A0A061GEP8_THECC	8E-176	Leucine-rich repeat transmembrane protein kinase {ECO:0000313\|EMBL:EOY27893.1}
TAIR10	AT1G53440.1	7E-118	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	31490974	31495364	-
GWHAAZE00000002	mRNA	31490974	31495364	-
GWHAAZE00000002	exon	31490974	31491351	-
GWHAAZE00000002	exon	31491789	31491939	-
GWHAAZE00000002	exon	31492270	31492507	-
GWHAAZE00000002	exon	31492601	31492811	-
GWHAAZE00000002	exon	31494866	31495242	-
GWHAAZE00000002	exon	31495352	31495364	-
GWHAAZE00000002	CDS	31495352	31495364	-
GWHAAZE00000002	CDS	31494866	31495242	-
GWHAAZE00000002	CDS	31492601	31492811	-
GWHAAZE00000002	CDS	31492270	31492507	-
GWHAAZE00000002	CDS	31491789	31491939	-
GWHAAZE00000002	CDS	31490974	31491351	-

Transcript Sequence
>GWHTAAZE006771 ATGGCTGAATACAATCGATATTCGCTGTATATAAATTGTGCTGGAGGTGAAACTACAATTGGGAAGACTGTTTATGAAGCGGATCAAAACTCAAACGGTCCTGCAAAATTTGATCTTTCAAATGAGAATTGGGGAACTAGTAACACGGGACACTTTTGGGACCGTAATTTAACTGCAGATGAGTATACAGCAAAGAATGTCTCTATTCTCAAAGTGAACAATCCCGAATTGTACACCTCGGCACGTCTCTCTCCTTTATCTCTCACTTATTATGGCCGTTGCTTAGCAAATGGAAACTACACTGTCACACTTCACTTTGCCGAGATAATGTTAAGGGACAATCAATCTTTTCAGAGTCTTGGGAGACGCATATTTGATGTTTATATTCAGGGTATATTATTGGATGGTACTGTAATTGCGGTTAAGCAACTCTCTTCAAAATCAAGGCAAGGAAATCGCGAATTTGTTAATGAGATAGGTATCATATCTGGTTTACAGCACGAAAATCTTGTCAAATTGTACGGATGTTGTGTTGAAGGCAACCAATTACTATTGGTCTATGAGTACATGGAGAACAACAGCCTCGCCGCTGCTTTGTTTGGTCCAGAGGGAAGTGAAATGAATTTGGATTGGCCTACCAGGCAAAAAATATGTGTCGGCATAGCGAAAGGTCTAGTTTTCTTGCACGAGGAATCAATTCTTAAAATTGTTCATAGAGACATCAAAGCTACCAATGTACTGCTCGATGGAGACCTTAACCCAAAGATCTCGGACTTTGGTCTGGCCAAGCTTGACGAAGAGGAGAACACGCACATTAGCACTAGAGTTGCTGGAACAATAGGTTACATGGCACCAGAATATGCATTATGGGGTTACCTAACTTACAAAGCGGATGTGTACAGCTTTGGGGTTGTTGCATTGGAAATCGTTGCTGGAAAGAACAATATGAAATATCGTCCCAACGAGAATTTTGTTTGTCTTCTTGACTGGGCTCTTGTACTACAGAAAAAAGAAAGCTTGATGGCTATAATAGACCCGAGGCTAGGTTCGAATTTCGACAAGGAAGAGGCAATAAGAATGATCAAAGTAGCTCTATTATGCACTAATCCATCTCCAGCTCTTAGGCCAACGATGTCTGCAGTAGTAAGCATGCTTCAAGGCCATATCACCATTCAAGAGGTAGACAAGGACCCAAGCATCTATGGCGACGAATTCAACTTTCAATCTCTTAGAGACAAATATGATCGTGACTTGCAATTTCAAAAGTCGAGCGAAACCAGCACCCTTCTTCATTCATCTGATGCACCCAATCAATCTTCCTCCACTTCTGCTTGGGATCTCTATCCAGCGACGGAGTCGTCAATATAG

Network for GWHGAAZE006763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11721.9	Malectin	8	133	1.00E-23
PF07714.18	PK_Tyr_Ser-Thr	137	384	1.90E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.884
	SRR3591706	second leaf	112.354
	SRR3591707	mature leaf	130.629
	SRR3591708	Shoot apex	59.659
	SRR3591709	Stem	13.872
	SRR3591710	White floral bud	5.171
	SRR3591711	White flower	1.248
	SRR3591712	Green floral bud	15.150
	SRR3591713	Yellow flower	0.586
SRP173429	SRR8316895	Juvenile bud stage	23.257
	SRR8316896	Juvenile bud stage	29.576
	SRR8316897	Juvenile bud stage	1.570
	SRR8316894	Third green stage	7.576
	SRR8316900	Third green stage	6.179
	SRR8316901	Third green stage	7.965
	SRR8316898	Complete white stage	1.070
	SRR8316899	Complete white stage	23.246
	SRR8316903	Complete white stage	3.925
	SRR8316902	Silver flowering stage	0.451
	SRR8316904	Silver flowering stage	0.767
	SRR8316905	Silver flowering stage	0.345
	SRR8316906	Gold flowering stage	0.817
	SRR8316907	Gold flowering stage	0.207
	SRR8316908	Gold flowering stage	0.151
SRP132670	SRR6706286	Control	6.900
	SRR6706287	Light intensity 50%	8.171
	SRR6706288	Light intensity 20%	7.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.564
	CNS0095593	Slightly white alabastrum(diploid) 2	28.337
	CNS0095594	Slightly white alabastrum(diploid) 3	17.215
	CNS0095595	Whole white alabastrum(diploid) 2	18.251
	CNS0095596	Whole white alabastrum(diploid) 3	0.547
	CNS0095597	Whole white alabastrum(diploid) 4	8.024
	CNS0095598	Silvery flower (diploied) 1	25.607
	CNS0095599	Silvery flower (diploied) 2	26.552
	CNS0095600	Silvery flower (diploied) 3	3.936
	CNS0095601	Golden flower (diploid) 1	30.007
	CNS0095602	Golden flower (diploid) 2	5.058
	CNS0095603	Golden flower (diploid) 3	5.165
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.837
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.227
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.674
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.165
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.566
	CNS0095610	Silvery flower (tetraploid) 1	0.583
	CNS0095611	Silvery flower (tetraploid) 2	1.180
	CNS0095612	Silvery flower (tetraploid) 3	0.540
	CNS0095613	Golden flower (tetraploid) 1	0.355
	CNS0095614	Golden flower (tetraploid) 2	0.601
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	19.233
	CRR073298	Stem 2	15.764
	CRR073299	Stem 3	2.706
	CRR073300	Leaf 1	10.310
	CRR073301	Leaf 2	13.675
	CRR073302	Leaf 3	2.023
	CRR073303	Juvenile bud 1	1.424
	CRR073304	Juvenile bud 2	0.153
	CRR073305	Juvenile bud 3	3.566
	CRR073306	Third green 1	0.115
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.310
	CRR073309	Second white 1	0.294
	CRR073310	Second white 2	0.380
	CRR073311	Second white 3	0.345
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.032
	CRR073316	Gold flowering 2	4.304
	CRR073317	Gold flowering 3	1.149
	CRR073318	Tawny withering 1	3.636
	CRR073319	Tawny withering 2	6.853
	CRR073320	Tawny withering 3	4.634