Gene detail

Detail information of GWHGAAZE006758

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263226.1	0	PREDICTED: dual specificity protein kinase shkB [Vitis vinifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	6E-42	Serine/threonine-protein kinase HT1
trEMBL	tr\|D7TJT6\|D7TJT6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30758.3}
TAIR10	AT4G18950.1	9E-180	Integrin-linked protein kinase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	31413257	31422554	-
GWHAAZE00000002	mRNA	31413257	31422554	-
GWHAAZE00000002	exon	31413257	31413358	-
GWHAAZE00000002	exon	31413792	31413903	-
GWHAAZE00000002	exon	31413972	31414093	-
GWHAAZE00000002	exon	31414833	31414918	-
GWHAAZE00000002	exon	31415723	31415841	-
GWHAAZE00000002	exon	31415966	31416028	-
GWHAAZE00000002	exon	31416162	31416241	-
GWHAAZE00000002	exon	31417889	31418009	-
GWHAAZE00000002	exon	31418097	31418182	-
GWHAAZE00000002	exon	31418823	31418918	-
GWHAAZE00000002	exon	31419371	31419445	-
GWHAAZE00000002	exon	31422228	31422554	-
GWHAAZE00000002	CDS	31422228	31422554	-
GWHAAZE00000002	CDS	31419371	31419445	-
GWHAAZE00000002	CDS	31418823	31418918	-
GWHAAZE00000002	CDS	31418097	31418182	-
GWHAAZE00000002	CDS	31417889	31418009	-
GWHAAZE00000002	CDS	31416162	31416241	-
GWHAAZE00000002	CDS	31415966	31416028	-
GWHAAZE00000002	CDS	31415723	31415841	-
GWHAAZE00000002	CDS	31414833	31414918	-
GWHAAZE00000002	CDS	31413972	31414093	-
GWHAAZE00000002	CDS	31413792	31413903	-
GWHAAZE00000002	CDS	31413257	31413358	-

Transcript Sequence
>GWHTAAZE006766 ATGGAGTCCAAGGGAGCGGCGAGATTCACACTGGGGAAGCAATCATCGTTAGCACCGGACCGAGGAGGGGAAGAAGAGTATGAAAATTTGGAGGAGAGAGAAGATGGGGAGGGGATTGATTCGGGGGTGAGGTTGATGTATTTGGCGAATGAGGGGGATTTGGAGGGGATTAAGGAGTTGTTGGGTTCCGGTACCGATGTCAATTTTAGGGATATTGATGATCGGACGGCGTTGCATGTTTCGGCTTGCCAGGGTTCTACCGCCGTCGTCAAGCTTTTGCTTGAACGAGGGGCTGAAGTTGACCCCAAGGATCGTTGGGGTAGCACGCCTCTTGCAGATGCAATACATTATAAGAAGCATGATGTGATCAAACTTCTGGAGCAACATGGTGCAAAACCTCTGGTGGCCCCCATGCACGTCAGAAATGCCCGTGAAGTCCCAGAATATGAAATTGATCCCAAAGAACTTGATTTTACAAACAGCGTTGAATTAACTAAGGGAACATATCATATTGCTTTATGGCGTGGAACACAAGTTGCTGTAAAAAAGCTTGATGAAGAAGTGATTACCAATGAAGATAAAGTGAGGTCATTTAGGGATGAACTTGCTTTGCTTCAGAAGATACGACATCCTAATGTGGTCCAGTTCCTTGGCGCTGTAACTCAGAGTAGTCCAATGATGATTGTGACGGAGTATTTACCAAAGGGTGATCTTCATGCATTTCTGAAAAGAAAAGGAGCGCTAAAGCCTATGACTGCTGTGCGATTTTCATTGGATATTGCAAGGGGGATGAACTATTTGCATGAGAATAAACCGGAAGCAATAATTCACCGTGATCTTGAACCTTCGAATATTTTACGGGATGATTCTGGCCATCTTAAAGTTGCAGACTTTGGGGTTAGCAAATTGCTAAAAGTCACGAACAGAGTTAGAGAGGATAGGCCTCTGCTTTGTCAAGACACTTCTTGCCGATACGTGGCGCCAGAGGTTTTCAGAAATGAAGATTATGATACCAAAGTTGATGTGTTTTCATTTGCTTTGATTTTACAAGAGATGATTGAAGGGTGCATACCTTTTTCCACAAAGCAAGAAAATGAAGTCCCTAAATTATATGCTGCACGAGAGCGCCCTCCTTTTAGAGCTCCGACGAAGTTTTACGCACATGGACTTAAAGAATTGATTGAGGAGTGTTGGAGCGAGAAGCCAACTCAAAGACCAACATTCAGGCAAATCATCCCAAGGTTGGAGTCCATCTATAACACTCTTGGTCGCAAAAGGCATTGGAAGGTTCGACCATTGAATTGCTTTCAGAATCTGGAGGCACTGTGGAAGAAAGACAAATCCAACAGAAGTAGCCGCAGCAGCTCTCGTTCTTCCAATACCTTCTAG

Network for GWHGAAZE006758

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	45	133	1.80E-13
PF07714.18	PK_Tyr_Ser-Thr	174	415	7.40E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.227
	SRR3591706	second leaf	10.698
	SRR3591707	mature leaf	16.478
	SRR3591708	Shoot apex	12.744
	SRR3591709	Stem	22.049
	SRR3591710	White floral bud	16.524
	SRR3591711	White flower	20.803
	SRR3591712	Green floral bud	13.357
	SRR3591713	Yellow flower	32.851
SRP173429	SRR8316895	Juvenile bud stage	13.343
	SRR8316896	Juvenile bud stage	18.806
	SRR8316897	Juvenile bud stage	10.912
	SRR8316894	Third green stage	7.614
	SRR8316900	Third green stage	19.582
	SRR8316901	Third green stage	17.758
	SRR8316898	Complete white stage	9.016
	SRR8316899	Complete white stage	30.100
	SRR8316903	Complete white stage	15.681
	SRR8316902	Silver flowering stage	10.560
	SRR8316904	Silver flowering stage	12.126
	SRR8316905	Silver flowering stage	5.519
	SRR8316906	Gold flowering stage	27.849
	SRR8316907	Gold flowering stage	21.993
	SRR8316908	Gold flowering stage	28.157
SRP132670	SRR6706286	Control	16.419
	SRR6706287	Light intensity 50%	17.416
	SRR6706288	Light intensity 20%	17.545
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.525
	CNS0095593	Slightly white alabastrum(diploid) 2	17.594
	CNS0095594	Slightly white alabastrum(diploid) 3	15.620
	CNS0095595	Whole white alabastrum(diploid) 2	12.344
	CNS0095596	Whole white alabastrum(diploid) 3	9.697
	CNS0095597	Whole white alabastrum(diploid) 4	11.042
	CNS0095598	Silvery flower (diploied) 1	20.438
	CNS0095599	Silvery flower (diploied) 2	17.154
	CNS0095600	Silvery flower (diploied) 3	18.842
	CNS0095601	Golden flower (diploid) 1	19.209
	CNS0095602	Golden flower (diploid) 2	21.203
	CNS0095603	Golden flower (diploid) 3	20.853
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.833
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.553
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.610
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.825
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.520
	CNS0095610	Silvery flower (tetraploid) 1	30.581
	CNS0095611	Silvery flower (tetraploid) 2	22.012
	CNS0095612	Silvery flower (tetraploid) 3	17.313
	CNS0095613	Golden flower (tetraploid) 1	25.926
	CNS0095614	Golden flower (tetraploid) 2	30.207
	CNS0095615	Golden flower (tetraploid) 3	30.789
CRA001975	CRR073297	Stem 1	16.028
	CRR073298	Stem 2	12.649
	CRR073299	Stem 3	11.513
	CRR073300	Leaf 1	13.074
	CRR073301	Leaf 2	16.044
	CRR073302	Leaf 3	11.327
	CRR073303	Juvenile bud 1	14.601
	CRR073304	Juvenile bud 2	9.559
	CRR073305	Juvenile bud 3	14.876
	CRR073306	Third green 1	5.570
	CRR073307	Third green 2	4.478
	CRR073308	Third green 3	4.658
	CRR073309	Second white 1	5.832
	CRR073310	Second white 2	7.202
	CRR073311	Second white 3	7.753
	CRR073312	Silver flowering 1	9.850
	CRR073313	Silver flowering 2	8.207
	CRR073314	Silver flowering 3	5.379
	CRR073315	Gold flowering 1	8.394
	CRR073316	Gold flowering 2	10.527
	CRR073317	Gold flowering 3	5.833
	CRR073318	Tawny withering 1	17.141
	CRR073319	Tawny withering 2	23.374
	CRR073320	Tawny withering 3	17.363