Gene detail

Detail information of GWHGAAZE006728

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004147416.1	1.125E-179	PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like [Cucumis sativus]
Swissprot	tr\|P27493\|CB22_TOBAC	5E-180	Chlorophyll a-b binding protein 21, chloroplastic (Precursor)
trEMBL	tr\|A0A0A0LX23\|A0A0A0LX23_CUCSA	4E-180	Chlorophyll A/B binding protein {ECO:0000313\|EMBL:KGN65549.1}
TAIR10	AT1G29930.1	5E-136	chlorophyll A/B binding protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30964417	30965214	+
GWHAAZE00000002	mRNA	30964417	30965214	+
GWHAAZE00000002	exon	30964417	30965214	+
GWHAAZE00000002	CDS	30964417	30965214	+

Transcript Sequence
>GWHTAAZE006736 ATGGCTGCTTCAACAATGGCCCTCTCTTCCCCATCTTTTGCTGGAAAGTTGGTGAAACTCACTCCGGCTGCACAAAAGCTCTTTGGCACTTCAAGAGTTTCCATGAGGCAAACGGCCAGAAAGCCCGTTTCATCCGGCAGCCCATGGTACGGTCCTGACCGCGTCAAGTACTTGGGTCCATTCTCCGGTGAGTCCCCATCCTACCTTACCGGTGAATTCCCAGGCGACTATGGGTGGGACACTGCTGGTCTTTCAGCTGATCCGGAAACCTTTGCCAAGAACCGTGAGCTCGAGGTGATCCACAGCCGATGGGCCATGCTTGGAGCACTAGGGTGCGTCTTCCCCGAGCTATTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGAGCCCAAATCTTTAGTGAGGGTGGGCTTGACTACTTGGGCAATCCAAGCTTGGTCCACGCCCAAAGCATCTTGGCCATATGGGCGTCACAAGTTATCTTGATGGGGGCCGTTGAGGGGTACCGTGTGGCTGGTGGGCCCCTCGGTGAGGTGGTGGATCCACTCTACCCTGGAGGAAGCTTTGACCCATTGGGTCTTGCTGATGACCCGGAAGCTTTTGCAGAGTTGAAGGTGAAGGAGCTAAAGAATGGGAGACTTGCCATGTTTTCAATGTTTGGGTTCTTTGTTCAGGCTATTGTGACCGGAAAGGGACCATTGGAGAACCTAGCTGACCATTTAGCTGATCCAGTTAGCAACAATGCTTGGGCCTATGCCACTAACTTTGTCCCTGGAAAGTGA

Network for GWHGAAZE006728

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	66	231	1.90E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08912	LHCB1	Metabolic pathways	map01100
K08912	LHCB1	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1143.845
	SRR3591706	second leaf	6283.854
	SRR3591707	mature leaf	1665.308
	SRR3591708	Shoot apex	1709.148
	SRR3591709	Stem	890.712
	SRR3591710	White floral bud	14.705
	SRR3591711	White flower	23.699
	SRR3591712	Green floral bud	15.683
	SRR3591713	Yellow flower	3.823
SRP173429	SRR8316895	Juvenile bud stage	15.600
	SRR8316896	Juvenile bud stage	8.456
	SRR8316897	Juvenile bud stage	10.537
	SRR8316894	Third green stage	3.197
	SRR8316900	Third green stage	5.591
	SRR8316901	Third green stage	5.652
	SRR8316898	Complete white stage	1.104
	SRR8316899	Complete white stage	6.510
	SRR8316903	Complete white stage	3.168
	SRR8316902	Silver flowering stage	0.569
	SRR8316904	Silver flowering stage	1.004
	SRR8316905	Silver flowering stage	0.125
	SRR8316906	Gold flowering stage	0.390
	SRR8316907	Gold flowering stage	0.207
	SRR8316908	Gold flowering stage	0.310
SRP132670	SRR6706286	Control	9.241
	SRR6706287	Light intensity 50%	9.309
	SRR6706288	Light intensity 20%	8.343
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.733
	CNS0095593	Slightly white alabastrum(diploid) 2	10.779
	CNS0095594	Slightly white alabastrum(diploid) 3	8.772
	CNS0095595	Whole white alabastrum(diploid) 2	5.332
	CNS0095596	Whole white alabastrum(diploid) 3	7.012
	CNS0095597	Whole white alabastrum(diploid) 4	5.767
	CNS0095598	Silvery flower (diploied) 1	48.630
	CNS0095599	Silvery flower (diploied) 2	56.403
	CNS0095600	Silvery flower (diploied) 3	14.160
	CNS0095601	Golden flower (diploid) 1	60.582
	CNS0095602	Golden flower (diploid) 2	24.893
	CNS0095603	Golden flower (diploid) 3	26.397
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.510
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.993
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.383
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.624
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.476
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.838
	CNS0095610	Silvery flower (tetraploid) 1	14.380
	CNS0095611	Silvery flower (tetraploid) 2	17.669
	CNS0095612	Silvery flower (tetraploid) 3	11.061
	CNS0095613	Golden flower (tetraploid) 1	9.909
	CNS0095614	Golden flower (tetraploid) 2	15.104
	CNS0095615	Golden flower (tetraploid) 3	6.604
CRA001975	CRR073297	Stem 1	5.225
	CRR073298	Stem 2	3.155
	CRR073299	Stem 3	9.706
	CRR073300	Leaf 1	0.680
	CRR073301	Leaf 2	2.804
	CRR073302	Leaf 3	3.050
	CRR073303	Juvenile bud 1	1.734
	CRR073304	Juvenile bud 2	0.199
	CRR073305	Juvenile bud 3	1.978
	CRR073306	Third green 1	0.643
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.624
	CRR073309	Second white 1	0.143
	CRR073310	Second white 2	0.239
	CRR073311	Second white 3	0.028
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	14.464
	CRR073316	Gold flowering 2	10.671
	CRR073317	Gold flowering 3	12.845
	CRR073318	Tawny withering 1	7.813
	CRR073319	Tawny withering 2	4.887
	CRR073320	Tawny withering 3	6.821