Gene detail

Detail information of GWHGAAZE006718

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002519707.1	0	50 kDa ketoavyl-ACP synthase [Ricinus communis]
Swissprot	tr\|P23902\|KASC1_HORVU	0	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor)
trEMBL	tr\|Q41135\|Q41135_RICCO	0	Plastid 3-keto-acyl-ACP synthase I {ECO:0000313\|EMBL:ABR12416.1} (Precursor)
TAIR10	AT5G46290.1	3E-158	3-ketoacyl-acyl carrier protein synthase I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30725687	30731087	-
GWHAAZE00000002	mRNA	30725687	30731087	-
GWHAAZE00000002	exon	30730629	30731087	-
GWHAAZE00000002	exon	30730307	30730381	-
GWHAAZE00000002	exon	30729717	30729784	-
GWHAAZE00000002	exon	30729576	30729639	-
GWHAAZE00000002	exon	30729058	30729489	-
GWHAAZE00000002	exon	30728178	30728351	-
GWHAAZE00000002	exon	30726723	30727088	-
GWHAAZE00000002	exon	30726448	30726514	-
GWHAAZE00000002	exon	30725687	30725933	-
GWHAAZE00000002	CDS	30730629	30731087	-
GWHAAZE00000002	CDS	30730307	30730381	-
GWHAAZE00000002	CDS	30729717	30729784	-
GWHAAZE00000002	CDS	30729576	30729639	-
GWHAAZE00000002	CDS	30729058	30729489	-
GWHAAZE00000002	CDS	30728178	30728351	-
GWHAAZE00000002	CDS	30726723	30727088	-
GWHAAZE00000002	CDS	30726448	30726514	-
GWHAAZE00000002	CDS	30725866	30725933	-
GWHAAZE00000002	three_prime_UTR	30725687	30725865	-

Transcript Sequence
>GWHTAAZE006726 ATGCAAGCACTTCAATCGCCTTCCCTCCGCCCCTCCCCACTCGCCCCACTCCTCAAACAATCCCCAAATCTCACCACCACCACCACTACCACCACCACCAATGCCAAACCACTCAAGCCCCTCTCCATTTCCGCCTCCGCTCAAACCATCCCCACGCGCGAGAAGGATCCCAAGAAGCGCGTGGTCATCACCGGCATGGGCTTAGTCTCCGTTTTCGGCAACGACGTTGATACCTACTACGACCGCCTCTTAGAAGGTGAGAGCGGGATCGGACTCATCGACCGCTTCGATGCCTCCAAATTCCCCACCCGATTCGGGGGCCAGATTCGTGGCTTCGATTCCCAAGGCTACATCGATGGCAAGAATGATAGGCGTCTCGATGATTGCCTCCGCTATTGCATTGTTGCTGGCAAGAAGGCTCTGGAACATGCGGATCTCGGCGGGGATAAACGCTCCAAGATTGAATTTTGCATTTGCTCTGTGTTTTCTCTACTGGAATTGGACAGTGCTAGTACTATGATGATATATGTTCAGAGTGTACAAGGCATACACGGAACCTTCGCCTCCAGTAAAGGATTTGTTCACAAGATATCAGCCGGTTACGCCATTTGCATGCCCAATTTGACTATCACACTTATTCTATTTCTGGTCATTTTATTAGGACCGGTTGATAAGGAGCGTGCTGGCGTGCTTGTTGGAACAGGGATGGGTGGTCTTACAGTGTTTTCTGACGGGGTTAAAGCTCTCATAGAGAGAGGTTACAGAAAAATCACCCCATTTTTCATACCTTATGCCATAACAAACATGGGGTCCGCCTTGCTTGCAATTGATCTTGGCTTTATGGGTCCCAACTATTCGATTTCAACCGCGTGTGCTACCTCTAATTATTGCTTCTATGCTGCGGCCAATCACATTCGCCGAGGTGAGGCAGATATGATGATTGCTGGCGGCACTGAAGCCGCCATTATTCCTATTGGTTTGGGAGGTTTTGTTGCATGTAGAGCCTTGTCTCAGAGAAATGATGATCCACAGACTGCTTCTAGGCCATGGGACAAGGATCGAGATGGCTTTGTTATGGGTGAAGGTGCCGGTGTTTTGGTGATGGAGAGCTTGGAACATGCAATGAAGCGAGGTGCACCGATAATTGCTGAATACTTGGGAGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCAAGATCTGATGGACTTGGTGTTTCTTCCTGCATTCAGAGCGCCCTAGAGGATGCTGGTGTTTCACCAGAAGAGGTTAATTACATAAATGCACATGCAACTTCCACTTTAGTTGGTGACTTGGCTGAGATAAATGCTATAAAAAAGGTTTTCAAGAACACTTCAGGGATCAAAATAAATGCAACCAAGGTGATCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAAAATTTCAGATTCAAGCAGGCTATAGCAATGCTGCTCTGAGGGAATCTTCAGATCAGTGTTTCTTTTTAATAATTATTTTCAGTCTCTTTCGTTTTCAGTCTATGATAGGGCACTGCCTTGGAGCTGCGGGTGGTTTGGAAGCCATTGCCTCTGTGAAAGCCATTACTACAGGGTGGCTGCATCCTACTATTAATCAATTTAATCCAGAGCCTTCAGTTGACTTTGACACTGTCGCTAATAAAAAGCAGCAGCATGAAGTGAATGTTGCCATTTCAAATTCATTCGGATTCGGGGGACATAATTCCGTTGTGGCCTTTTCGTCATTCAAGCCTTGAGAGGGGAGGTAGCCCTTTTGTGTACTTATTAATGAGCGTGAATCTTCTATTTATTTGAGGTACGAGTTCTATATATCTATGGAGGCTGCTTCATCAAGAAGTACTTTTGGAGGATTCATAATTGTTGTTTTATGTAATAATTTTGCATTTTTTAAGTGTTGCTTAAGGGACTCCCAGTC

Network for GWHGAAZE006718

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.27	ketoacyl-synt	59	150	2.00E-12
PF00109.27	ketoacyl-synt	223	374	7.30E-40
PF02801.23	Ketoacyl-synt_C	383	462	5.50E-20
PF02801.23	Ketoacyl-synt_C	512	544	3.00E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.073
	SRR3591706	second leaf	49.871
	SRR3591707	mature leaf	12.777
	SRR3591708	Shoot apex	66.469
	SRR3591709	Stem	13.007
	SRR3591710	White floral bud	31.265
	SRR3591711	White flower	26.872
	SRR3591712	Green floral bud	71.532
	SRR3591713	Yellow flower	17.909
SRP173429	SRR8316895	Juvenile bud stage	49.519
	SRR8316896	Juvenile bud stage	68.298
	SRR8316897	Juvenile bud stage	29.938
	SRR8316894	Third green stage	25.142
	SRR8316900	Third green stage	77.170
	SRR8316901	Third green stage	68.312
	SRR8316898	Complete white stage	11.861
	SRR8316899	Complete white stage	38.199
	SRR8316903	Complete white stage	24.152
	SRR8316902	Silver flowering stage	7.927
	SRR8316904	Silver flowering stage	10.950
	SRR8316905	Silver flowering stage	5.585
	SRR8316906	Gold flowering stage	10.489
	SRR8316907	Gold flowering stage	11.884
	SRR8316908	Gold flowering stage	11.390
SRP132670	SRR6706286	Control	54.539
	SRR6706287	Light intensity 50%	56.623
	SRR6706288	Light intensity 20%	59.583
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.887
	CNS0095593	Slightly white alabastrum(diploid) 2	46.031
	CNS0095594	Slightly white alabastrum(diploid) 3	47.038
	CNS0095595	Whole white alabastrum(diploid) 2	36.691
	CNS0095596	Whole white alabastrum(diploid) 3	48.148
	CNS0095597	Whole white alabastrum(diploid) 4	31.968
	CNS0095598	Silvery flower (diploied) 1	25.789
	CNS0095599	Silvery flower (diploied) 2	27.241
	CNS0095600	Silvery flower (diploied) 3	28.261
	CNS0095601	Golden flower (diploid) 1	17.601
	CNS0095602	Golden flower (diploid) 2	20.754
	CNS0095603	Golden flower (diploid) 3	20.195
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	55.723
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.127
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.329
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.629
	CNS0095610	Silvery flower (tetraploid) 1	21.397
	CNS0095611	Silvery flower (tetraploid) 2	22.803
	CNS0095612	Silvery flower (tetraploid) 3	15.956
	CNS0095613	Golden flower (tetraploid) 1	8.130
	CNS0095614	Golden flower (tetraploid) 2	21.178
	CNS0095615	Golden flower (tetraploid) 3	4.057
CRA001975	CRR073297	Stem 1	62.938
	CRR073298	Stem 2	59.616
	CRR073299	Stem 3	68.339
	CRR073300	Leaf 1	49.707
	CRR073301	Leaf 2	56.699
	CRR073302	Leaf 3	51.479
	CRR073303	Juvenile bud 1	59.650
	CRR073304	Juvenile bud 2	46.899
	CRR073305	Juvenile bud 3	57.977
	CRR073306	Third green 1	15.592
	CRR073307	Third green 2	14.782
	CRR073308	Third green 3	13.967
	CRR073309	Second white 1	9.653
	CRR073310	Second white 2	7.828
	CRR073311	Second white 3	8.231
	CRR073312	Silver flowering 1	7.113
	CRR073313	Silver flowering 2	11.540
	CRR073314	Silver flowering 3	9.456
	CRR073315	Gold flowering 1	12.166
	CRR073316	Gold flowering 2	15.618
	CRR073317	Gold flowering 3	13.928
	CRR073318	Tawny withering 1	21.395
	CRR073319	Tawny withering 2	17.014
	CRR073320	Tawny withering 3	26.727