Detail information of GWHGAAZE006714


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010243801.13.0124E-101PREDICTED: 40S ribosomal protein S14-like [Nelumbo nucifera]
Swissprottr|P42036|RS143_ARATH3E-9240S ribosomal protein S14-3
trEMBLtr|A0A059CDE6|A0A059CDE6_EUCGR2E-101Uncharacterized protein {ECO:0000313|EMBL:KCW75925.1}
TAIR10AT3G52580.17E-64Ribosomal protein S11 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3066317430664854-
GWHAAZE00000002mRNA3066317430664854-
GWHAAZE00000002exon3066317430663241-
GWHAAZE00000002exon3066361230663741-
GWHAAZE00000002exon3066418830664273-
GWHAAZE00000002exon3066459130664636-
GWHAAZE00000002exon3066472330664854-
GWHAAZE00000002CDS3066472330664854-
GWHAAZE00000002CDS3066459130664636-
GWHAAZE00000002CDS3066418830664273-
GWHAAZE00000002CDS3066361230663741-
GWHAAZE00000002CDS3066317430663241-
Transcript Sequence

Network for GWHGAAZE006714

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00411.20Ribosomal_S11311493.20E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02955RP-S14e, RPS14 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf370.569
SRR3591706second leaf215.608
SRR3591707mature leaf79.319
SRR3591708Shoot apex402.080
SRR3591709Stem191.423
SRR3591710White floral bud151.385
SRR3591711White flower189.265
SRR3591712Green floral bud298.332
SRR3591713Yellow flower134.142
SRP173429 SRR8316895Juvenile bud stage 211.562
SRR8316896Juvenile bud stage 279.271
SRR8316897Juvenile bud stage 149.544
SRR8316894Third green stage 113.471
SRR8316900Third green stage 439.381
SRR8316901Third green stage 406.598
SRR8316898Complete white stage 90.968
SRR8316899Complete white stage 410.066
SRR8316903Complete white stage 125.883
SRR8316902Silver flowering stage90.871
SRR8316904Silver flowering stage80.971
SRR8316905Silver flowering stage48.975
SRR8316906Gold flowering stage 156.817
SRR8316907Gold flowering stage 156.196
SRR8316908Gold flowering stage 175.639
SRP132670SRR6706286Control280.793
SRR6706287Light intensity 50%292.674
SRR6706288Light intensity 20%338.337
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1316.451
CNS0095593Slightly white alabastrum(diploid) 2396.487
CNS0095594Slightly white alabastrum(diploid) 3309.822
CNS0095595Whole white alabastrum(diploid) 2308.193
CNS0095596Whole white alabastrum(diploid) 3380.499
CNS0095597Whole white alabastrum(diploid) 4244.173
CNS0095598Silvery flower (diploied) 1196.822
CNS0095599Silvery flower (diploied) 2177.097
CNS0095600Silvery flower (diploied) 3140.909
CNS0095601Golden flower (diploid) 1144.753
CNS0095602Golden flower (diploid) 2115.222
CNS0095603Golden flower (diploid) 3111.843
CNS0095604Slightly white alabastrum(tetraploid) 1273.498
CNS0095605Slightly white alabastrum(tetraploid) 2285.996
CNS0095606Slightly white alabastrum(tetraploid) 3379.103
CNS0095607Whole white alabastrum(tetraploid) 1190.624
CNS0095608Whole white alabastrum(tetraploid) 2179.325
CNS0095609Whole white alabastrum(tetraploid) 3332.351
CNS0095610Silvery flower (tetraploid) 1147.848
CNS0095611Silvery flower (tetraploid) 2111.227
CNS0095612Silvery flower (tetraploid) 381.622
CNS0095613Golden flower (tetraploid) 189.478
CNS0095614Golden flower (tetraploid) 2140.297
CNS0095615Golden flower (tetraploid) 372.768
CRA001975CRR073297Stem 1211.015
CRR073298Stem 2226.566
CRR073299Stem 3232.087
CRR073300Leaf 1236.057
CRR073301Leaf 2268.333
CRR073302Leaf 3367.200
CRR073303Juvenile bud 1251.862
CRR073304Juvenile bud 2188.764
CRR073305Juvenile bud 3177.034
CRR073306Third green 137.887
CRR073307Third green 253.373
CRR073308Third green 342.606
CRR073309Second white 137.715
CRR073310Second white 234.807
CRR073311Second white 323.318
CRR073312Silver flowering 134.420
CRR073313Silver flowering 236.953
CRR073314Silver flowering 327.180
CRR073315Gold flowering 1106.165
CRR073316Gold flowering 2119.333
CRR073317Gold flowering 392.100
CRR073318Tawny withering 1190.314
CRR073319Tawny withering 2182.377
CRR073320Tawny withering 3179.307