Gene detail

Detail information of GWHGAAZE006672

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010277758.1	1.1319E-146	PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera]
Swissprot	tr\|O80678\|UBA2B_ARATH	4E-51	UBP1-associated protein 2B
trEMBL	tr\|A5ADJ5\|A5ADJ5_VITVI	1E-141	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66609.1}
TAIR10	AT3G15010.2	5E-80	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	29768313	29770311	-
GWHAAZE00000002	mRNA	29768313	29770311	-
GWHAAZE00000002	exon	29768313	29769249	-
GWHAAZE00000002	exon	29769971	29770311	-
GWHAAZE00000002	CDS	29769971	29770311	-
GWHAAZE00000002	CDS	29768313	29769249	-

Transcript Sequence
>GWHTAAZE006680 ATGGACTTCTCAAAGAAGCGCAAAGCTGACGAAAACGGCACCGTATTCACCACCGATACCTCTCCCCCGTCGCTAACCCTATCTCTCTCTCCACAAGACGTTCGCAAAATCATCGACCCCTTCACAAAGGATCAGCTCCTCGAAATCCTCCAAAACGCCGTCGTACGGGACCCCCTCGTCCTCGATGCTATCCGTTCTGTCGCCGATTCCGACGTGACACAGCGGAAGCTCTTCATTCGCGGCCTCGGCTGGGAAACCACCACAGATAAGCTCCGAGCAATTTTCACGGCCTTTGGTGAACTTGAGGAGGCGATTGTCATCACTGATAAGAACACCGGGAAGCACATAGATGGCGCTATACTGGCCTTGAAGGAACCAAATAAGAAGATCGATGGTAGAATCACTGTTGCTCAGTTAGCAGCATTGGGGAATTCTGGTGGATCAAATGCGGTTGATGTCTCAATGAGGAAGATTTATGTTGGGAATATTCCGTTTGAGATTTCGTCAGAGAGGCTTTTAGCACACTTTTCGGCTTATGGAGAGATTGAGGAAGGTCCACTAGGGTTTGATAAGCAGGCTGGGAAAGTAAAAGGATTTGCTTTCTTTGTGTACAAGACTGAGGAAGGGGCTAGGGCTTCGCTTGTTGATCCTATGAAAAACATTGATGGACATCAAGTCGCTTGTAAATTGGCCACCGATGGTAAGAAGGGGAAGACTGGTGCACCGAATGCCGGTGGGTTCCAGGGGTCCACTGGGGCGCCCGGTGAGGTCCCACCTCCCGGCTCCATGAATTCAAACTATGGTGGTCCTGGTGGGATGCCGGCTTATGGTGGTTATTCCGGTGGACCGCCAGCACTTGCTCATCAAAACCTACCATTGACTGGCAGTGCGGGATTTGGGAATCAGGGTCCTGGTTCATATGGTGGTGGTGGCGGCGGAGGGTATGGGCTCCCATTGACTGGTGGTGCCGGAGGCGGTGTTGGAAGCGGTGTGGGAGGAGGTGGAGGGTATGGACTCCATTTGATGGGCGGTGGATATGGTGGTGGGTCACAGTATAGTGGGTCTGCATCAGGGGAGTTTGGTGGATTGAACAATTCTGGGCCCTCTATGTATAATAGAATGCCACCAAGTTCTGTTGGAATGCCTTCTGGAGGATACCCTGAGGGTGGAAATTATGGTTTGTCGTCAGCATACCCATCACAGCTGCAGCAGCCTCCCTCGGGTCCTAGGGTTCCGCCTGGCGGGATGTACGGCCAGGGAATGCCGCCGTACTACTAA

Network for GWHGAAZE006672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	77	115	5.80E-06
PF00076.23	RRM_1	158	214	1.40E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.613
	SRR3591706	second leaf	37.563
	SRR3591707	mature leaf	42.438
	SRR3591708	Shoot apex	79.039
	SRR3591709	Stem	50.841
	SRR3591710	White floral bud	85.735
	SRR3591711	White flower	111.794
	SRR3591712	Green floral bud	77.522
	SRR3591713	Yellow flower	57.809
SRP173429	SRR8316895	Juvenile bud stage	41.224
	SRR8316896	Juvenile bud stage	49.152
	SRR8316897	Juvenile bud stage	26.232
	SRR8316894	Third green stage	18.953
	SRR8316900	Third green stage	49.446
	SRR8316901	Third green stage	50.587
	SRR8316898	Complete white stage	19.862
	SRR8316899	Complete white stage	75.255
	SRR8316903	Complete white stage	32.096
	SRR8316902	Silver flowering stage	38.355
	SRR8316904	Silver flowering stage	35.731
	SRR8316905	Silver flowering stage	15.617
	SRR8316906	Gold flowering stage	50.135
	SRR8316907	Gold flowering stage	57.496
	SRR8316908	Gold flowering stage	56.618
SRP132670	SRR6706286	Control	49.781
	SRR6706287	Light intensity 50%	50.795
	SRR6706288	Light intensity 20%	51.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.314
	CNS0095593	Slightly white alabastrum(diploid) 2	60.775
	CNS0095594	Slightly white alabastrum(diploid) 3	49.151
	CNS0095595	Whole white alabastrum(diploid) 2	51.424
	CNS0095596	Whole white alabastrum(diploid) 3	45.202
	CNS0095597	Whole white alabastrum(diploid) 4	35.799
	CNS0095598	Silvery flower (diploied) 1	57.499
	CNS0095599	Silvery flower (diploied) 2	44.154
	CNS0095600	Silvery flower (diploied) 3	63.771
	CNS0095601	Golden flower (diploid) 1	46.350
	CNS0095602	Golden flower (diploid) 2	58.926
	CNS0095603	Golden flower (diploid) 3	56.727
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.386
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.979
	CNS0095606	Slightly white alabastrum(tetraploid) 3	114.809
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.018
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.855
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.452
	CNS0095610	Silvery flower (tetraploid) 1	85.879
	CNS0095611	Silvery flower (tetraploid) 2	63.480
	CNS0095612	Silvery flower (tetraploid) 3	52.102
	CNS0095613	Golden flower (tetraploid) 1	36.303
	CNS0095614	Golden flower (tetraploid) 2	57.089
	CNS0095615	Golden flower (tetraploid) 3	46.026
CRA001975	CRR073297	Stem 1	61.336
	CRR073298	Stem 2	65.439
	CRR073299	Stem 3	88.482
	CRR073300	Leaf 1	60.790
	CRR073301	Leaf 2	62.071
	CRR073302	Leaf 3	71.831
	CRR073303	Juvenile bud 1	69.228
	CRR073304	Juvenile bud 2	55.127
	CRR073305	Juvenile bud 3	78.545
	CRR073306	Third green 1	50.993
	CRR073307	Third green 2	43.361
	CRR073308	Third green 3	50.184
	CRR073309	Second white 1	60.484
	CRR073310	Second white 2	36.407
	CRR073311	Second white 3	29.779
	CRR073312	Silver flowering 1	44.255
	CRR073313	Silver flowering 2	65.881
	CRR073314	Silver flowering 3	39.530
	CRR073315	Gold flowering 1	55.245
	CRR073316	Gold flowering 2	67.189
	CRR073317	Gold flowering 3	78.454
	CRR073318	Tawny withering 1	56.650
	CRR073319	Tawny withering 2	52.011
	CRR073320	Tawny withering 3	55.785