Gene detail

Detail information of GWHGAAZE006660

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276338.2	8.592E-106	PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 15, mitochondrial [Vitis vinifera]
Swissprot	tr\|Q8GYB1\|NUD15_ARATH	4E-95	Nudix hydrolase 15, mitochondrial (Precursor)
trEMBL	tr\|F6HM72\|F6HM72_VITVI	1E-102	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55660.1}
TAIR10	AT1G28960.4	5E-70	nudix hydrolase homolog 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	29566768	29568049	+
GWHAAZE00000002	mRNA	29566768	29568049	+
GWHAAZE00000002	exon	29566768	29566996	+
GWHAAZE00000002	exon	29567110	29567252	+
GWHAAZE00000002	exon	29567434	29567553	+
GWHAAZE00000002	exon	29567635	29568049	+
GWHAAZE00000002	CDS	29566768	29566996	+
GWHAAZE00000002	CDS	29567110	29567252	+
GWHAAZE00000002	CDS	29567434	29567553	+
GWHAAZE00000002	CDS	29567635	29567838	+
GWHAAZE00000002	three_prime_UTR	29567839	29568049	+

Transcript Sequence
>GWHTAAZE006668 ATGGGTTCCAATAGCTTTACAGGATCCAATAAAATGATGAAATTGGCTCAACAGCTTAGTCTCAACAATTCAATTATATCTGTGAAGAAGAACCCAGTTGATTTAGAAAACGAAAGATTGAGACCCAAGTCCAACAGAGCAGCTGTTCTCATCTGCCTCTTCGAAGACGAAGGCCATGATCTGCGCGTAATTCTCACCAAGCGATCTTCAACCCTCTCCTCTCACTCCGGGGAAGTTTCATTGCCCGGAGGGAAATGTGAAGAGAGTGACGCCGATGACGTTCAGACGGCATTGAGGGAGGCTCACGAGGAGATTGGATTGGATCCTTCACTTGTGGATGTTGTTTCTGTTCTTCAACCCATTACTACTAAGCAAGGCATGATAGTAGTTCCAGTGATTGGCATACTGTATGACAAGAATGCTTTTAATCCAGCTCCAAATGCAGCAGAAGTTGAAGCAATATTTGATGCTCCTTTAGAAATGTTCCTTAAGGATGAAAATCGAACCCAAGAGGAGAGGGAATGGATGGGAAACAAATATCTGCTTCATTTCTTCGATTACGAAGCAGAAAACAAGAAATATGTCATATGGGCTTTAACCGCCGGAATTTTGATAACTGCCGCATCACTTGTGTACCAAAAACAGCCAGCTTTTTCAGAGAGGAAGCCTAAATTCTGGACCACAAATCACGAATGAACATCAATTTGTACTTCGGCTTTGACAATAGTGTTACTCCAGAATTTAGGATAGTATGTTCATTGTTGACTCGTATTTCCCAAGAGGAATTAATAAAAGTTGTAAGTGTCAATTATGTTAACTACTTGACTTTGTCATCGTTTTTTGACACCTATTTGAATTGAATAGATTGAGATAATAATTTTAGACATCACTCAGATGTAATAATCAA

Network for GWHGAAZE006660

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00293.29	NUDIX	46	124	8.00E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17879	NUDT7	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.671
	SRR3591706	second leaf	14.805
	SRR3591707	mature leaf	2.125
	SRR3591708	Shoot apex	15.204
	SRR3591709	Stem	5.482
	SRR3591710	White floral bud	10.446
	SRR3591711	White flower	1.385
	SRR3591712	Green floral bud	5.160
	SRR3591713	Yellow flower	1.424
SRP173429	SRR8316895	Juvenile bud stage	6.181
	SRR8316896	Juvenile bud stage	9.019
	SRR8316897	Juvenile bud stage	3.457
	SRR8316894	Third green stage	3.346
	SRR8316900	Third green stage	8.845
	SRR8316901	Third green stage	7.919
	SRR8316898	Complete white stage	2.838
	SRR8316899	Complete white stage	8.369
	SRR8316903	Complete white stage	5.903
	SRR8316902	Silver flowering stage	1.788
	SRR8316904	Silver flowering stage	2.235
	SRR8316905	Silver flowering stage	1.170
	SRR8316906	Gold flowering stage	5.308
	SRR8316907	Gold flowering stage	2.965
	SRR8316908	Gold flowering stage	5.728
SRP132670	SRR6706286	Control	8.679
	SRR6706287	Light intensity 50%	8.994
	SRR6706288	Light intensity 20%	9.489
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.800
	CNS0095593	Slightly white alabastrum(diploid) 2	7.113
	CNS0095594	Slightly white alabastrum(diploid) 3	5.835
	CNS0095595	Whole white alabastrum(diploid) 2	4.615
	CNS0095596	Whole white alabastrum(diploid) 3	5.282
	CNS0095597	Whole white alabastrum(diploid) 4	4.611
	CNS0095598	Silvery flower (diploied) 1	2.479
	CNS0095599	Silvery flower (diploied) 2	1.723
	CNS0095600	Silvery flower (diploied) 3	2.127
	CNS0095601	Golden flower (diploid) 1	2.418
	CNS0095602	Golden flower (diploid) 2	0.845
	CNS0095603	Golden flower (diploid) 3	0.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.441
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.540
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.903
	CNS0095610	Silvery flower (tetraploid) 1	1.945
	CNS0095611	Silvery flower (tetraploid) 2	0.549
	CNS0095612	Silvery flower (tetraploid) 3	0.859
	CNS0095613	Golden flower (tetraploid) 1	1.290
	CNS0095614	Golden flower (tetraploid) 2	0.952
	CNS0095615	Golden flower (tetraploid) 3	1.362
CRA001975	CRR073297	Stem 1	9.076
	CRR073298	Stem 2	8.099
	CRR073299	Stem 3	3.983
	CRR073300	Leaf 1	8.475
	CRR073301	Leaf 2	9.286
	CRR073302	Leaf 3	11.092
	CRR073303	Juvenile bud 1	7.343
	CRR073304	Juvenile bud 2	5.303
	CRR073305	Juvenile bud 3	5.551
	CRR073306	Third green 1	7.036
	CRR073307	Third green 2	8.274
	CRR073308	Third green 3	7.597
	CRR073309	Second white 1	0.953
	CRR073310	Second white 2	0.697
	CRR073311	Second white 3	0.742
	CRR073312	Silver flowering 1	1.038
	CRR073313	Silver flowering 2	0.730
	CRR073314	Silver flowering 3	0.290
	CRR073315	Gold flowering 1	1.540
	CRR073316	Gold flowering 2	1.674
	CRR073317	Gold flowering 3	2.246
	CRR073318	Tawny withering 1	5.484
	CRR073319	Tawny withering 2	3.865
	CRR073320	Tawny withering 3	9.247