Detail information of GWHGAAZE006648


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADC94860.13.32178E-48ERF3 transcription factor [Vitis pseudoreticulata]
Swissprottr|O04681|PTI5_SOLLC5E-47Pathogenesis-related genes transcriptional activator PTI5
trEMBLtr|D3Y3F3|D3Y3F3_9ROSI1E-48ERF3 transcription factor {ECO:0000313|EMBL:ADC94860.1}
TAIR10AT4G17490.11E-21ethylene responsive element binding factor 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2939217029392622+
GWHAAZE00000002mRNA2939217029392622+
GWHAAZE00000002exon2939217029392622+
GWHAAZE00000002CDS2939217029392622+
Transcript Sequence

Network for GWHGAAZE006648

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP235853.20E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
K13433PTI5 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.635
SRR3591706second leaf0.602
SRR3591707mature leaf2.748
SRR3591708Shoot apex0.784
SRR3591709Stem21.324
SRR3591710White floral bud26.604
SRR3591711White flower29.550
SRR3591712Green floral bud4.570
SRR3591713Yellow flower51.689
SRP173429 SRR8316895Juvenile bud stage 1.208
SRR8316896Juvenile bud stage 1.260
SRR8316897Juvenile bud stage 3.250
SRR8316894Third green stage 1.774
SRR8316900Third green stage 6.532
SRR8316901Third green stage 6.832
SRR8316898Complete white stage 1.814
SRR8316899Complete white stage 17.603
SRR8316903Complete white stage 3.158
SRR8316902Silver flowering stage1.114
SRR8316904Silver flowering stage2.423
SRR8316905Silver flowering stage1.760
SRR8316906Gold flowering stage 22.303
SRR8316907Gold flowering stage 6.263
SRR8316908Gold flowering stage 32.459
SRP132670SRR6706286Control6.422
SRR6706287Light intensity 50%5.647
SRR6706288Light intensity 20%3.118
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.443
CNS0095593Slightly white alabastrum(diploid) 221.444
CNS0095594Slightly white alabastrum(diploid) 315.016
CNS0095595Whole white alabastrum(diploid) 216.715
CNS0095596Whole white alabastrum(diploid) 30.495
CNS0095597Whole white alabastrum(diploid) 410.231
CNS0095598Silvery flower (diploied) 151.240
CNS0095599Silvery flower (diploied) 299.303
CNS0095600Silvery flower (diploied) 318.811
CNS0095601Golden flower (diploid) 1134.004
CNS0095602Golden flower (diploid) 250.683
CNS0095603Golden flower (diploid) 349.019
CNS0095604Slightly white alabastrum(tetraploid) 12.355
CNS0095605Slightly white alabastrum(tetraploid) 20.781
CNS0095606Slightly white alabastrum(tetraploid) 33.039
CNS0095607Whole white alabastrum(tetraploid) 12.312
CNS0095608Whole white alabastrum(tetraploid) 20.774
CNS0095609Whole white alabastrum(tetraploid) 30.840
CNS0095610Silvery flower (tetraploid) 12.892
CNS0095611Silvery flower (tetraploid) 22.599
CNS0095612Silvery flower (tetraploid) 32.253
CNS0095613Golden flower (tetraploid) 18.304
CNS0095614Golden flower (tetraploid) 27.623
CNS0095615Golden flower (tetraploid) 31.575
CRA001975CRR073297Stem 11.235
CRR073298Stem 22.887
CRR073299Stem 32.120
CRR073300Leaf 15.656
CRR073301Leaf 28.393
CRR073302Leaf 34.492
CRR073303Juvenile bud 14.233
CRR073304Juvenile bud 21.557
CRR073305Juvenile bud 34.995
CRR073306Third green 13.752
CRR073307Third green 22.320
CRR073308Third green 31.955
CRR073309Second white 10.361
CRR073310Second white 20.763
CRR073311Second white 30.523
CRR073312Silver flowering 15.172
CRR073313Silver flowering 20.497
CRR073314Silver flowering 36.856
CRR073315Gold flowering 13.282
CRR073316Gold flowering 27.300
CRR073317Gold flowering 38.590
CRR073318Tawny withering 141.598
CRR073319Tawny withering 284.073
CRR073320Tawny withering 317.136