Gene detail

Detail information of GWHGAAZE006636

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006449384.1	2.45303E-88	hypothetical protein CICLE_v10014553mg [Citrus clementina]
Swissprot	tr\|Q84VG7\|FES1_ARATH	1E-28	Protein FRIGIDA-ESSENTIAL 1
trEMBL	tr\|V4W8T4\|V4W8T4_9ROSI	9E-89	Uncharacterized protein {ECO:0000313\|EMBL:ESR62624.1}
TAIR10	AT3G18640.1	3E-17	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	29109437	29111477	-
GWHAAZE00000002	mRNA	29109437	29111477	-
GWHAAZE00000002	exon	29109437	29110602	-
GWHAAZE00000002	exon	29110696	29110925	-
GWHAAZE00000002	exon	29111014	29111477	-
GWHAAZE00000002	CDS	29111014	29111477	-
GWHAAZE00000002	CDS	29110696	29110925	-
GWHAAZE00000002	CDS	29109437	29110602	-

Transcript Sequence
>GWHTAAZE006644 ATGGAATCCCCAGAACATGAAGAGCACTTGAAACCAGTTTCCTGTACTCCAGAGAAATCTCTAGAAAATCTTCCACAAGATACCCATGCAGTAGAAGGCAGTAGTGGCATTCCCAAGTCTCTGGAATCAATTGAGATGCGACAAGTAGACGAATCAAGCGTCAATGATGAGGGAAAGCATGCTATTGCTTTCGAAGATAAAGATAAACAAGAATTGGGTGCTCTTGCAGGAACACCCAAACACCACGGTGATGCTCACTGCGATGGTAAAAATCCTCCACGTGAAAGTGGGGTAATGAACGCCGAGACCAACAAGCCTTCTAGTGTATCCACTAAAGAAGTGACCCCCACAGTTTCGATGAAAGATATATTTGATACAGAGGCTAATGATATTGTATTTCCCGAGGAAGAAACTAAGCAAATGGGCGTGCAGGCTGGGAAGGATTTAGAGCAAACAACATCAAGATCGGATGTTCCTCTTACAAGGCCCAGGAGTTTGTCCCCTGGTGCAGATTTTAAGGACAGTAAGAAACGTCCAGCGGTCATATGCGACTTTTTTGCTAAAGGTTGGTGCATCAAAGGGAATTCTTGTAGGTTCCTTCATATAAAAGAGCGTGTTGATGATAGTACTAGCCAACAGCAAGAGGGAACTGTAGCTACTGCAAATCAAAAGAGTGAACTCCAATTGAGTGAAGGTTTAAGGGACTCTACTGAAGGATCACAAGAATGTGGAAAAAGTCCAATGGGGAAGAGTGGGTCTCAAGAGTTGCATTTATACAAAGACAATGCTAGGATTATCTCTCCTTTTAAGGATGATTATGGCAAATATGGTTCTCCGATTATTAGCGGTGAATCTCCAATTAATTCAGTTAGATTACTTGATACACACCGAAGAGGAAATTTTGCAATAAATTCAGAAGAAATGGTTGGTAGGGGAAACCCGTTTTCGCTCAACGATCGTAGTTTACCGGGACTTAGCCATTCTTTGAATTCAAGCTCAAGCACTTCTGTACCAAACCCAGGGATTTTCTCATCAAATCGTATTTCTCCCTGGGCTAGGTCGTCTTCAACTTTTAGTTCATCTTCTTGGAATCTGGATCCCCTTGGCACCCACAAGCATGTGGATAGTGATAGAGAGAATTTTGCTTCCAATATCCCAAGTGGATATAAAACGAAAATTTCTTCCAATGATTGGGAGCCATCTGTACCTTTTCGATCAGCCTTTTTAGCTAGTAAAAATTTGTCGTCTCCTGGTAGTAACCAGTACGATCCTATTCGTGATAGCATTGAGCCACCAAAATTTGAAGACGGGTTCTCTAAATTTCCTTCGAGTACATATCTGCAGAGAAACGTTAATCCTGCACTACCAGAGAACCATCATGGAAAGGATGTGCTTGTAGCTGGGAAAGAAATTGCAAGTTTTGCTGAGTGGAAAAGTAGGAATGCATTGCCCAAAGATGAGAAGCTTTCGGCCACTGCTCATATAAGAGATATCAAAAAATCTGATAAGGCTAGTATCGATAGCGAAAGCACACTTCAAAGCAATGGACCAAAAGAAAAAGTAGATAGGGCTTCACAAAATAATGAAATGGATTTTGATTTTACTAAGATGGATGAAAATATGTACAAGGAATCAAAAGCCTTTAAACAATTTAGGGCAGCCCTCATAGAGTTTGTGAAAGAGCTGGTCAAACCGGCGTGGCGCGATGGTCTCTTGAGCAAAGATGCTCACAAAGTGATAGTTAAAAAAGCAGTTGACAAGGTCCTTAGCACATTGCCATCCAACCAAGTTCCATGCACTGCCGAGGCAGCTAAGCTTTACCTTTCTGCGTCCCAGCCGAAAATTGCCAAACTTGTTGAG

Network for GWHGAAZE006636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	182	201	3.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.136
	SRR3591706	second leaf	3.808
	SRR3591707	mature leaf	3.658
	SRR3591708	Shoot apex	6.041
	SRR3591709	Stem	5.929
	SRR3591710	White floral bud	4.497
	SRR3591711	White flower	6.391
	SRR3591712	Green floral bud	6.442
	SRR3591713	Yellow flower	4.070
SRP173429	SRR8316895	Juvenile bud stage	2.664
	SRR8316896	Juvenile bud stage	3.318
	SRR8316897	Juvenile bud stage	1.599
	SRR8316894	Third green stage	1.789
	SRR8316900	Third green stage	4.222
	SRR8316901	Third green stage	4.665
	SRR8316898	Complete white stage	1.080
	SRR8316899	Complete white stage	5.223
	SRR8316903	Complete white stage	3.586
	SRR8316902	Silver flowering stage	1.873
	SRR8316904	Silver flowering stage	3.076
	SRR8316905	Silver flowering stage	0.909
	SRR8316906	Gold flowering stage	3.158
	SRR8316907	Gold flowering stage	3.300
	SRR8316908	Gold flowering stage	4.356
SRP132670	SRR6706286	Control	2.732
	SRR6706287	Light intensity 50%	2.971
	SRR6706288	Light intensity 20%	3.336
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.550
	CNS0095593	Slightly white alabastrum(diploid) 2	2.271
	CNS0095594	Slightly white alabastrum(diploid) 3	3.651
	CNS0095595	Whole white alabastrum(diploid) 2	3.351
	CNS0095596	Whole white alabastrum(diploid) 3	1.903
	CNS0095597	Whole white alabastrum(diploid) 4	2.191
	CNS0095598	Silvery flower (diploied) 1	3.477
	CNS0095599	Silvery flower (diploied) 2	3.036
	CNS0095600	Silvery flower (diploied) 3	4.485
	CNS0095601	Golden flower (diploid) 1	2.830
	CNS0095602	Golden flower (diploid) 2	4.222
	CNS0095603	Golden flower (diploid) 3	4.378
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.679
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.853
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.401
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.370
	CNS0095610	Silvery flower (tetraploid) 1	5.354
	CNS0095611	Silvery flower (tetraploid) 2	4.647
	CNS0095612	Silvery flower (tetraploid) 3	3.875
	CNS0095613	Golden flower (tetraploid) 1	2.425
	CNS0095614	Golden flower (tetraploid) 2	4.775
	CNS0095615	Golden flower (tetraploid) 3	4.506
CRA001975	CRR073297	Stem 1	4.061
	CRR073298	Stem 2	3.502
	CRR073299	Stem 3	4.030
	CRR073300	Leaf 1	3.108
	CRR073301	Leaf 2	2.861
	CRR073302	Leaf 3	1.679
	CRR073303	Juvenile bud 1	2.876
	CRR073304	Juvenile bud 2	2.335
	CRR073305	Juvenile bud 3	3.515
	CRR073306	Third green 1	1.612
	CRR073307	Third green 2	1.641
	CRR073308	Third green 3	1.909
	CRR073309	Second white 1	1.558
	CRR073310	Second white 2	2.565
	CRR073311	Second white 3	2.610
	CRR073312	Silver flowering 1	2.592
	CRR073313	Silver flowering 2	3.302
	CRR073314	Silver flowering 3	2.160
	CRR073315	Gold flowering 1	1.557
	CRR073316	Gold flowering 2	1.650
	CRR073317	Gold flowering 3	1.689
	CRR073318	Tawny withering 1	3.162
	CRR073319	Tawny withering 2	2.805
	CRR073320	Tawny withering 3	4.272